Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29599 Trifolium pratense HOM05D028020 ORTHO05D000183 5.6e-37 157.9 140 100.0
TPR.G31998 Trifolium pratense HOM05D000311 ORTHO05D000183 2.5e-21 105.9 139 83.5
TPR.G8943 Trifolium pratense HOM05D000311 ORTHO05D000183 1.0e-17 94.0 140 80.7
Medtr4g016850 Medicago truncatula HOM05D000311 ORTHO05D000183 1.7e-17 93.2 129 83.7
TPR.G35963 Trifolium pratense HOM05D028020 ORTHO05D000183 2.5e-16 89.4 62 67.7
TPR.G6114 Trifolium pratense HOM05D000311 ORTHO05D000183 2.5e-16 89.4 62 67.7
TPR.G39535 Trifolium pratense HOM05D000311 ORTHO05D000183 5.5e-16 88.2 128 82.8
TPR.G29381 Trifolium pratense HOM05D028020 ORTHO05D000183 2.7e-15 85.9 62 67.7
Medtr4g016910 Medicago truncatula HOM05D000311 ORTHO05D000183 4.6e-15 85.1 128 82.0
TPR.G997 Trifolium pratense HOM05D000311 ORTHO05D000183 4.6e-15 85.1 125 84.0
Medtr4g015960 Medicago truncatula HOM05D000366 ORTHO05D001950 1.0e-14 84.0 128 82.0
TPR.G31997 Trifolium pratense HOM05D000311 ORTHO05D000183 1.8e-14 83.2 122 85.2
TPR.G28343 Trifolium pratense HOM05D000311 ORTHO05D000183 3.9e-14 82.0 62 64.5
Medtr4g015930 Medicago truncatula HOM05D000311 ORTHO05D000183 1.5e-13 80.1 128 81.2
Medtr4g016820 Medicago truncatula HOM05D000311 ORTHO05D000183 1.9e-13 79.7 128 80.5
Medtr4g016800 Medicago truncatula HOM05D000311 ORTHO05D000183 7.4e-13 77.8 128 81.2
Medtr4g016780 Medicago truncatula HOM05D000311 ORTHO05D000183 1.6e-12 76.6 122 82.8
TPR.G174 Trifolium pratense HOM05D000311 ORTHO05D000183 2.8e-12 75.9 48 68.8
TPR.G20786 Trifolium pratense HOM05D000005 ORTHO05D000012 5.3e-11 71.6 45 68.9
TPR.G27767 Trifolium pratense HOM05D028020 ORTHO05D000183 1.7e-09 66.6 36 86.1
Nn2g15962 Nelumbo nucifera HOM05D000311 ORTHO05D000183 6.5e-09 64.7 63 50.8
Medtr4g021705 Medicago truncatula HOM05D000311 ORTHO05D000183 8.5e-09 64.3 64 45.3
VMungo0331G1915 Vigna mungo HOM05D000311 ORTHO05D000183 2.5e-08 62.8 139 69.8
QL04p004538 Quercus lobata HOM05D000311 ORTHO05D000183 7.2e-08 61.2 49 57.1
QL04p004667 Quercus lobata HOM05D000311 ORTHO05D000183 7.2e-08 61.2 49 57.1
QL93p2015_0040 Quercus lobata HOM05D000311 ORTHO05D000183 7.2e-08 61.2 49 57.1
Duzib168G1955 Durio zibethinus HOM05D000311 ORTHO05D000183 1.2e-07 60.5 53 52.8
CSS0030458 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.6e-07 60.1 131 66.4
arahy.Tifrunner.gnm1.ann1.08PUCD Arachis hypogaea HOM05D000311 ORTHO05D000183 2.7e-07 59.3 63 54.0
COL.COLO4_33363 Corchorus olitorius HOM05D000311 ORTHO05D000183 2.7e-07 59.3 49 49.0
Ciclev10019556m.g Citrus clementina HOM05D000311 ORTHO05D000183 3.6e-07 58.9 46 58.7
CSS0006016 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 4.6e-07 58.5 49 51.0
QL04p004476 Quercus lobata HOM05D000311 ORTHO05D000183 4.6e-07 58.5 49 53.1
Nn2g15942 Nelumbo nucifera HOM05D000311 ORTHO05D000183 6.1e-07 58.2 55 54.5
COL.COLO4_20182 Corchorus olitorius HOM05D000311 ORTHO05D000183 7.9e-07 57.8 48 52.1
Manes.11G060231 Manihot esculenta HOM05D000311 ORTHO05D000183 7.9e-07 57.8 126 70.6
QL04p003852 Quercus lobata HOM05D000311 ORTHO05D000183 7.9e-07 57.8 50 56.0
Duzib019G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 1.0e-06 57.4 49 51.0
Duzib184G0004 Durio zibethinus HOM05D000311 ORTHO05D000183 1.0e-06 57.4 49 51.0
Duzib212G0107 Durio zibethinus HOM05D000311 ORTHO05D000183 1.0e-06 57.4 46 52.2
Duzib212G1037 Durio zibethinus HOM05D000311 ORTHO05D000183 1.0e-06 57.4 46 52.2
Duzib214G0002 Durio zibethinus HOM05D000311 ORTHO05D000183 1.0e-06 57.4 49 51.0
Manes.11G055428 Manihot esculenta HOM05D000311 ORTHO05D000183 1.0e-06 57.4 126 72.2
Thecc.06G032600 Theobroma cacao HOM05D000311 ORTHO05D000183 1.0e-06 57.4 125 74.4
CSS0000641 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.3e-06 57.0 56 44.6
Dinv36446 Davidia involucrata HOM05D000311 ORTHO05D000183 1.3e-06 57.0 49 51.0
Nn8g39596 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.3e-06 57.0 49 55.1
QL04p003897 Quercus lobata HOM05D000311 ORTHO05D000183 1.3e-06 57.0 50 54.0
CSS0044420 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.8e-06 56.6 59 42.4
Duzib212G0440 Durio zibethinus HOM05D000311 ORTHO05D000183 1.8e-06 56.6 48 50.0
Duzib212G0835 Durio zibethinus HOM05D000311 ORTHO05D000183 1.8e-06 56.6 48 50.0
Duzib212G0990 Durio zibethinus HOM05D000311 ORTHO05D000183 1.8e-06 56.6 48 50.0
Gorai.004G053700 Gossypium raimondii HOM05D000311 ORTHO05D000183 1.8e-06 56.6 49 46.9
QL04p004735 Quercus lobata HOM05D000311 ORTHO05D000183 1.8e-06 56.6 50 56.0
Cc11_g05590 Coffea canephora HOM05D000311 ORTHO05D000183 2.3e-06 56.2 125 73.6
MELO3C023439.2 Cucumis melo HOM05D000311 ORTHO05D000183 2.3e-06 56.2 52 53.8
Gohir.D08G053700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.3e-06 56.2 49 46.9
Nn2g15975 Nelumbo nucifera HOM05D000311 ORTHO05D000183 2.3e-06 56.2 60 50.0
Nn2g15976 Nelumbo nucifera HOM05D000311 ORTHO05D000183 2.3e-06 56.2 60 50.0
Nn2g15977 Nelumbo nucifera HOM05D000311 ORTHO05D000183 2.3e-06 56.2 60 50.0
QL04p003704 Quercus lobata HOM05D000311 ORTHO05D000183 2.3e-06 56.2 67 44.8
Manes.04G110200 Manihot esculenta HOM05D000311 ORTHO05D000183 3.0e-06 55.8 47 53.2
Manes.11G059336 Manihot esculenta HOM05D000311 ORTHO05D000183 3.0e-06 55.8 126 72.2
Manes.11G060255 Manihot esculenta HOM05D000311 ORTHO05D000183 3.0e-06 55.8 126 72.2
COL.COLO4_34812 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.9e-06 55.5 49 49.0
Duzib168G2401 Durio zibethinus HOM05D000311 ORTHO05D000183 3.9e-06 55.5 52 50.0
Duzib192G0408 Durio zibethinus HOM05D000311 ORTHO05D000183 3.9e-06 55.5 54 46.3
Duzib212G0774 Durio zibethinus HOM05D000311 ORTHO05D000183 3.9e-06 55.5 46 52.2
Nn2g15945 Nelumbo nucifera HOM05D000311 ORTHO05D000183 3.9e-06 55.5 54 51.9
Oeu011159.1 Olea europaea HOM05D000311 ORTHO05D000183 3.9e-06 55.5 50 52.0
CSS0028153 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 5.1e-06 55.1 58 43.1
Duzib212G0289 Durio zibethinus HOM05D000311 ORTHO05D000183 5.1e-06 55.1 46 50.0
Duzib212G0384 Durio zibethinus HOM05D000311 ORTHO05D000183 5.1e-06 55.1 46 50.0
Manes.11G055420 Manihot esculenta HOM05D000311 ORTHO05D000183 5.1e-06 55.1 126 71.4
Manes.11G055436 Manihot esculenta HOM05D000311 ORTHO05D000183 5.1e-06 55.1 126 71.4
Manes.11G059572 Manihot esculenta HOM05D000311 ORTHO05D000183 5.1e-06 55.1 126 71.4
Manes.11G060055 Manihot esculenta HOM05D000311 ORTHO05D000183 5.1e-06 55.1 126 71.4
Manes.11G060061 Manihot esculenta HOM05D000311 ORTHO05D000183 5.1e-06 55.1 126 71.4
Manes.S095508 Manihot esculenta HOM05D000311 ORTHO05D000183 5.1e-06 55.1 126 71.4
QL04p003552 Quercus lobata HOM05D000311 ORTHO05D000183 5.1e-06 55.1 50 54.0
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 5.1e-06 55.1 49 51.0
CsaV3_7G032230 Cucumis sativus L. HOM05D000311 ORTHO05D000183 6.7e-06 54.7 51 51.0
Gohir.A08G041900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.7e-06 54.7 48 47.9
Gohir.A10G216900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.7e-06 54.7 48 45.8
Gorai.004G051800 Gossypium raimondii HOM05D000311 ORTHO05D000183 6.7e-06 54.7 49 46.9
Manes.11G060000 Manihot esculenta HOM05D000311 ORTHO05D000183 6.7e-06 54.7 126 71.4
Thecc.10G149900 Theobroma cacao HOM05D000311 ORTHO05D000183 6.7e-06 54.7 47 51.1
arahy.Tifrunner.gnm1.ann1.IQF2VD Arachis hypogaea HOM05D000311 ORTHO05D000183 8.7e-06 54.3 50 48.0
CiPaw.01G052500 Carya illinoinensis HOM05D000311 ORTHO05D000183 8.7e-06 54.3 46 56.5
CiPaw.04G177700 Carya illinoinensis HOM05D000311 ORTHO05D000183 8.7e-06 54.3 126 73.8
CiPaw.04G177900 Carya illinoinensis HOM05D000311 ORTHO05D000183 8.7e-06 54.3 48 52.1
Duzib212G0447 Durio zibethinus HOM05D000311 ORTHO05D000183 8.7e-06 54.3 46 47.8
Lsat_1_v5_gn_1_29681 Lactuca sativa HOM05D000311 ORTHO05D000183 8.7e-06 54.3 49 53.1
Manes.04G110000 Manihot esculenta HOM05D000311 ORTHO05D000183 8.7e-06 54.3 47 53.2
Nn2g15328 Nelumbo nucifera HOM05D000311 ORTHO05D000183 8.7e-06 54.3 63 46.0
Nn8g40065 Nelumbo nucifera HOM05D000311 ORTHO05D000183 8.7e-06 54.3 49 53.1
TAR383G0685 Trochodendron aralioides HOM05D000311 ORTHO05D000183 8.7e-06 54.3 49 51.0
TAR626G0484 Trochodendron aralioides HOM05D000311 ORTHO05D000183 8.7e-06 54.3 59 45.8


User provided reference genes

Program Settings