Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29582 Trifolium pratense HOM05D001122 ORTHO05D001877 2.6e-25 117.9 56 100.0
Psat7g230000 Pisum sativum HOM05D001122 ORTHO05D001877 5.6e-20 100.1 59 84.7
Medtr4g029090 Medicago truncatula HOM05D001122 ORTHO05D001877 1.2e-19 99.0 65 76.9
RcHm_v2.0_Chr3g0460971 Rosa chinensis HOM05D001122 ORTHO05D001877 6.2e-11 70.1 40 80.0
Lalb_Chr07g0190691 Lupinus albus HOM05D001122 ORTHO05D001877 1.8e-10 68.6 65 58.5
Cpa.g.sc86.25 Carica papaya HOM05D001122 ORTHO05D001877 3.1e-10 67.8 43 69.8
Glyma.01G131300 Glycine max HOM05D001122 ORTHO05D001877 3.1e-10 67.8 49 71.4
HanXRQChr01g0000001 Helianthus annuus HOM05D001122 ORTHO05D001877 3.1e-10 67.8 38 76.3
Lj3g0016412 Lotus japonicus HOM05D001122 ORTHO05D001877 3.1e-10 67.8 40 80.0
Ca_07747_v3 Cicer arietinum L. HOM05D001122 ORTHO05D001877 4.0e-10 67.4 51 66.7
MD04G1171400 Malus domestica HOM05D001122 ORTHO05D001877 4.0e-10 67.4 41 73.2
TPR.G4407 Trifolium pratense HOM05D001122 ORTHO05D001877 4.0e-10 67.4 37 81.1
MELO3C009115.2 Cucumis melo HOM05D001122 ORTHO05D001877 6.8e-10 66.6 36 83.3
Sed0011321 Sechium edule HOM05D001122 ORTHO05D001877 6.8e-10 66.6 45 71.1
TWI77G0311 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 6.8e-10 66.6 42 69.0
Ca_19776_v3 Cicer arietinum L. HOM05D001122 ORTHO05D001877 8.9e-10 66.2 43 79.1
ClCG10G022610 Citrullus lanatus HOM05D001122 ORTHO05D001877 8.9e-10 66.2 36 83.3
FAN05G3468 Fragaria x ananassa HOM05D001122 ORTHO05D001877 8.9e-10 66.2 40 75.0
Lj1g0026787 Lotus japonicus HOM05D001122 ORTHO05D001877 8.9e-10 66.2 46 71.7
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 8.9e-10 66.2 38 76.3
FAN05G1096 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.2e-09 65.9 40 75.0
Thecc.04G155100 Theobroma cacao HOM05D001122 ORTHO05D001877 1.2e-09 65.9 36 77.8
FvH4_6g10230 Fragaria vesca HOM05D001122 ORTHO05D001877 1.5e-09 65.5 37 81.1
FAN09G1334 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.5e-09 65.5 37 81.1
FAN14G3888 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.5e-09 65.5 37 81.1
Phvul.010G067400 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 1.5e-09 65.5 49 71.4
Glyma.03G037500 Glycine max HOM05D001122 ORTHO05D001877 2.0e-09 65.1 49 67.3
MD12G1184800 Malus domestica HOM05D001122 ORTHO05D001877 2.0e-09 65.1 36 80.6
PGR031G0394 Punica granatum HOM05D001122 ORTHO05D001877 2.0e-09 65.1 40 77.5
VMungo0331G1084 Vigna mungo HOM05D001122 ORTHO05D001877 2.0e-09 65.1 49 67.3
Atru.chr8.2373 Acer truncatum HOM05D001122 ORTHO05D001877 2.6e-09 64.7 37 78.4
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 2.6e-09 64.7 33 84.8
CsaV3_3G033220 Cucumis sativus L. HOM05D001122 ORTHO05D001877 2.6e-09 64.7 36 80.6
Eucgr.A00686 Eucalyptus grandis HOM05D001122 ORTHO05D001877 2.6e-09 64.7 34 79.4
QL07p032789 Quercus lobata HOM05D001122 ORTHO05D001877 2.6e-09 64.7 50 62.0
FAN02G1434 Fragaria x ananassa HOM05D001122 ORTHO05D001877 3.4e-09 64.3 37 78.4
Duzib151G1105 Durio zibethinus HOM05D001122 ORTHO05D001877 4.4e-09 63.9 31 87.1
TWI74G1328 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 4.4e-09 63.9 36 77.8
CiPaw.10G163900 Carya illinoinensis HOM05D001122 ORTHO05D001877 5.8e-09 63.5 36 75.0
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 5.8e-09 63.5 33 84.8
Gohir.A02G004900 Gossypium hirsutum HOM05D001122 ORTHO05D001877 5.8e-09 63.5 36 75.0
Duzib212G0698 Durio zibethinus HOM05D001122 ORTHO05D001877 7.5e-09 63.2 30 90.0
Gohir.D02G005300 Gossypium hirsutum HOM05D001122 ORTHO05D001877 7.5e-09 63.2 42 66.7
Gorai.005G006000 Gossypium raimondii HOM05D001122 ORTHO05D001877 7.5e-09 63.2 42 66.7
TPR.G5005 Trifolium pratense HOM05D001122 ORTHO05D001877 7.5e-09 63.2 28 96.4
COL.COLO4_30003 Corchorus olitorius HOM05D001122 ORTHO05D001877 9.8e-09 62.8 31 83.9
Hund03744 Selenicereus undatus HOM05D001122 ORTHO05D001877 9.8e-09 62.8 32 84.4
VMungo1383G2320 Vigna mungo HOM05D001122 ORTHO05D001877 9.8e-09 62.8 40 67.5
Ah.15g090230 Amaranthus hybridus HOM05D001122 ORTHO05D001877 1.3e-08 62.4 42 66.7
Dinv25307 Davidia involucrata HOM05D001122 ORTHO05D001877 1.7e-08 62.0 59 50.8
Oeu060448.2 Olea europaea HOM05D001122 ORTHO05D001877 1.7e-08 62.0 40 72.5
Potri.016G133300 Populus trichocarpa HOM05D001122 ORTHO05D001877 1.7e-08 62.0 38 71.1
Prupe.6G289900 Prunus persica HOM05D001122 ORTHO05D001877 1.7e-08 62.0 34 79.4
GSVIVG01030215001 Vitis vinifera HOM05D001122 ORTHO05D003607 1.7e-08 62.0 39 69.2
CANSAT35G1567 Cannabis sativa HOM05D001122 ORTHO05D001877 2.2e-08 61.6 30 86.7
CAN.G15.26 Capsicum annuum HOM05D001122 ORTHO05D001877 2.2e-08 61.6 35 80.0
MELO3C026053.2 Cucumis melo HOM05D001122 ORTHO05D001877 2.2e-08 61.6 33 78.8
HanXRQChr10g0298251 Helianthus annuus HOM05D001122 ORTHO05D001877 2.2e-08 61.6 34 79.4
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 2.2e-08 61.6 41 70.7
Oeu064876.1 Olea europaea HOM05D001122 ORTHO05D001877 2.2e-08 61.6 41 70.7
Phvul.008G086500 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 2.2e-08 61.6 40 65.0
Psat3g121320 Pisum sativum HOM05D001122 ORTHO05D001877 2.2e-08 61.6 44 65.9
AL4G38330 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 2.9e-08 61.2 48 64.6
AT2G40480 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 2.9e-08 61.2 48 64.6
arahy.Tifrunner.gnm1.ann1.5K0G3N Arachis hypogaea HOM05D001122 ORTHO05D001877 2.9e-08 61.2 32 84.4
arahy.Tifrunner.gnm1.ann1.MH7SIY Arachis hypogaea HOM05D001122 ORTHO05D001877 2.9e-08 61.2 32 84.4
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 2.9e-08 61.2 34 79.4
CsaV3_UNG107770 Cucumis sativus L. HOM05D001122 ORTHO05D001877 2.9e-08 61.2 37 70.3
Manes.09G115600 Manihot esculenta HOM05D001122 ORTHO05D001877 2.9e-08 61.2 39 76.9
ClCG04G006480 Citrullus lanatus HOM05D001122 ORTHO05D001877 3.7e-08 60.8 32 81.2
Haze_21139 Corylus avellana HOM05D001122 ORTHO05D001877 3.7e-08 60.8 34 79.4
Haze_21145 Corylus avellana HOM05D001122 ORTHO05D001877 3.7e-08 60.8 34 79.4
MSTRG.18958 Avicennia marina HOM05D001122 ORTHO05D001877 4.9e-08 60.5 52 55.8
EL10Ac7g17055 Beta vulgaris HOM05D001122 ORTHO05D001877 4.9e-08 60.5 31 83.9
Cc06_g00550 Coffea canephora HOM05D001122 ORTHO05D001877 4.9e-08 60.5 45 53.3
ECA248G3012 Erigeron canadensis HOM05D001122 ORTHO05D001877 4.9e-08 60.5 29 86.2
Thhalv10016518m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 4.9e-08 60.5 39 71.8
Peaxi162Scf00732g00440 Petunia axillaris HOM05D001122 ORTHO05D001877 4.9e-08 60.5 34 73.5
Solyc09g042710.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 4.9e-08 60.5 30 83.3
Sopen09g015510 Solanum pennellii HOM05D001122 ORTHO05D001877 4.9e-08 60.5 30 83.3
PGSC0003DMG400026574 Solanum tuberosum HOM05D001122 ORTHO05D001877 4.9e-08 60.5 30 83.3
Lsat_1_v5_gn_5_148221 Lactuca sativa HOM05D001122 ORTHO05D001877 6.4e-08 60.1 51 54.9
Sp4g22830 Schrenkiella parvula HOM05D001122 ORTHO05D001877 6.4e-08 60.1 39 71.8
Sed0001794 Sechium edule HOM05D001122 ORTHO05D001877 6.4e-08 60.1 35 74.3
THA.LOC104806629 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 6.4e-08 60.1 48 60.4
Carub.0004s2034 Capsella rubella HOM05D001122 ORTHO05D001877 8.3e-08 59.7 45 62.2
ECA236G4443 Erigeron canadensis HOM05D001122 ORTHO05D001877 8.3e-08 59.7 35 71.4
Gohir.A06G176200 Gossypium hirsutum HOM05D001122 ORTHO05D001877 8.3e-08 59.7 36 77.8
Gohir.D06G185800 Gossypium hirsutum HOM05D001122 ORTHO05D001877 8.3e-08 59.7 36 77.8
Gorai.010G217900 Gossypium raimondii HOM05D001122 ORTHO05D001877 8.3e-08 59.7 36 77.8
Hma1.2p1_1052F.1_g252360 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 8.3e-08 59.7 45 60.0
Nitab4.5_0000126g0030 Nicotiana tabacum HOM05D001122 ORTHO05D001877 8.3e-08 59.7 29 86.2
Rhsim05G0228900 Rhododendron simsii HOM05D001122 ORTHO05D001877 8.3e-08 59.7 37 70.3
CARHR161330 Cardamine hirsuta HOM05D001122 ORTHO05D001877 1.1e-07 59.3 35 74.3
Medtr7g072550 Medicago truncatula HOM05D001122 ORTHO05D001877 1.1e-07 59.3 43 69.8
THA.LOC104806079 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 1.1e-07 59.3 45 62.2
Aa31sc463G20 Aethionema arabicum HOM05D001122 ORTHO05D001877 1.4e-07 58.9 35 71.4
AL4G35590 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 1.4e-07 58.9 45 57.8
CSS0030369 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 1.4e-07 58.9 31 77.4
CARHR132980 Cardamine hirsuta HOM05D001122 ORTHO05D001877 1.4e-07 58.9 48 60.4
AUR62006350 Chenopodium quinoa HOM05D001122 ORTHO05D001877 1.4e-07 58.9 38 71.1
AUR62029682 Chenopodium quinoa HOM05D001122 ORTHO05D001877 1.4e-07 58.9 38 71.1
DCAR_028909 Daucus carota HOM05D001122 ORTHO05D001877 1.4e-07 58.9 29 86.2
Lalb_Chr12g0207571 Lupinus albus HOM05D001122 ORTHO05D001877 1.4e-07 58.9 26 100.0
Migut.J00063 Erythranthe guttata HOM05D001122 ORTHO05D001877 1.9e-07 58.5 40 62.5
Gohir.A10G181000 Gossypium hirsutum HOM05D001122 ORTHO05D001877 1.9e-07 58.5 38 71.1
Sc02g0000820 Simmondsia chinensis HOM05D001122 ORTHO05D001877 1.9e-07 58.5 40 65.0
arahy.Tifrunner.gnm1.ann1.P0IKGX Arachis hypogaea HOM05D001122 ORTHO05D001877 2.4e-07 58.2 29 82.8
arahy.Tifrunner.gnm1.ann1.Y8SUHG Arachis hypogaea HOM05D001122 ORTHO05D001877 2.4e-07 58.2 29 82.8
CsaV3_4G027030 Cucumis sativus L. HOM05D001122 ORTHO05D001877 2.4e-07 58.2 33 72.7
Aa31LG5G24080 Aethionema arabicum HOM05D001122 ORTHO05D001877 3.2e-07 57.8 34 73.5
MSTRG.5516 Avicennia marina HOM05D001122 ORTHO05D001877 3.2e-07 57.8 36 72.2
CARHR135600 Cardamine hirsuta HOM05D001122 ORTHO05D001877 3.2e-07 57.8 48 62.5
Thhalv10016492m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 3.2e-07 57.8 49 57.1
Actinidia11525 Actinidia chinensis HOM05D001122 ORTHO05D001877 4.1e-07 57.4 41 68.3
AL5G32170 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 4.1e-07 57.4 35 71.4
AT3G51720 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 4.1e-07 57.4 35 71.4
Carub.0005s1806 Capsella rubella HOM05D001122 ORTHO05D001877 4.1e-07 57.4 35 71.4
Glyma.18G211800 Glycine max HOM05D001122 ORTHO05D001877 4.1e-07 57.4 37 75.7
LjContig00357g0016613 Lotus japonicus HOM05D001122 ORTHO05D001877 4.1e-07 57.4 36 75.0
vmacro20355 Vaccinium macrocarpon HOM05D001122 ORTHO05D001877 4.1e-07 57.4 48 58.3
BcaB01g00491 Brassica carinata HOM05D001122 ORTHO05D001877 7.0e-07 56.6 35 68.6
BcaB01g00493 Brassica carinata HOM05D001122 ORTHO05D001877 7.0e-07 56.6 35 68.6
A09p44840 Brassica napus HOM05D001122 ORTHO05D001877 7.0e-07 56.6 35 68.6
BolC8t50306H Brassica oleracea HOM05D001122 ORTHO05D001877 7.0e-07 56.6 35 68.6
BraA09t39946Z Brassica rapa HOM05D001122 ORTHO05D001877 7.0e-07 56.6 35 68.6
CSS0044199 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 7.0e-07 56.6 33 72.7
Aqoxy2G00742 Aquilegia oxysepala HOM05D001122 ORTHO05D001877 9.2e-07 56.2 35 74.3
Manes.10G005500 Manihot esculenta HOM05D001122 ORTHO05D001877 9.2e-07 56.2 40 67.5
Nn2g11099 Nelumbo nucifera HOM05D001122 ORTHO05D001877 9.2e-07 56.2 46 54.3
Potri.019G049201 Populus trichocarpa HOM05D001122 ORTHO05D001877 9.2e-07 56.2 40 67.5
BcaB01g00426 Brassica carinata HOM05D001122 ORTHO05D001877 1.2e-06 55.8 41 61.0
BcaB06g29147 Brassica carinata HOM05D001122 ORTHO05D032295 1.2e-06 55.8 39 66.7
A04p30950 Brassica napus HOM05D001122 ORTHO05D001877 1.2e-06 55.8 39 66.7
C08p26890 Brassica napus HOM05D001122 ORTHO05D001877 1.2e-06 55.8 35 68.6
BraA04t18553Z Brassica rapa HOM05D001122 ORTHO05D001877 1.2e-06 55.8 39 66.7
Gohir.D10G187800 Gossypium hirsutum HOM05D001122 ORTHO05D001877 1.2e-06 55.8 37 70.3
Sabra19G0058700 Salix brachista HOM05D001122 ORTHO05D001877 1.2e-06 55.8 35 74.3
Aa31LG5G19040 Aethionema arabicum HOM05D001122 ORTHO05D001877 1.6e-06 55.5 36 72.2
BolC8t48053H Brassica oleracea HOM05D001122 ORTHO05D001877 1.6e-06 55.5 45 53.3
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.6e-06 55.5 41 63.4
C04p68340 Brassica napus HOM05D001122 ORTHO05D001877 2.1e-06 55.1 52 57.7
BolC4t28336H Brassica oleracea HOM05D001122 ORTHO05D001877 2.1e-06 55.1 52 57.7
Cpa.g.sc19.90 Carica papaya HOM05D001122 ORTHO05D001877 2.1e-06 55.1 36 72.2
CiPaw.09G218300 Carya illinoinensis HOM05D001122 ORTHO05D001877 2.1e-06 55.1 32 71.9
Thhalv10010401m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 2.1e-06 55.1 33 69.7
Gorai.011G210600 Gossypium raimondii HOM05D001122 ORTHO05D001877 2.1e-06 55.1 46 63.0
Psat5g131480 Pisum sativum HOM05D001122 ORTHO05D001877 2.1e-06 55.1 35 74.3
Prupe.2G261200 Prunus persica HOM05D001122 ORTHO05D001877 2.1e-06 55.1 36 72.2
FvH4_7g25600 Fragaria vesca HOM05D001122 ORTHO05D001877 2.7e-06 54.7 36 72.2
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.7e-06 54.7 36 72.2
FAN06G0201 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.7e-06 54.7 36 72.2
Lj6g0018919 Lotus japonicus HOM05D001122 ORTHO05D001877 2.7e-06 54.7 35 74.3
Lalb_Chr10g0105421 Lupinus albus HOM05D001122 ORTHO05D001877 2.7e-06 54.7 35 74.3
RcHm_v2.0_Chr1g0371731 Rosa chinensis HOM05D001122 ORTHO05D001877 2.7e-06 54.7 36 72.2
C03p25110 Brassica napus HOM05D001122 ORTHO05D001877 3.5e-06 54.3 54 51.9
Carub.0004s2274 Capsella rubella HOM05D001122 ORTHO05D001877 3.5e-06 54.3 41 63.4
Duzib128G1015 Durio zibethinus HOM05D001122 ORTHO05D001877 3.5e-06 54.3 37 70.3
Medtr3g072350 Medicago truncatula HOM05D001122 ORTHO05D001877 3.5e-06 54.3 37 70.3
Sc10g0002870 Simmondsia chinensis HOM05D001122 ORTHO05D001877 3.5e-06 54.3 43 58.1
THA.LOC104803194 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 3.5e-06 54.3 39 66.7
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 3.5e-06 54.3 33 72.7
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 3.5e-06 54.3 33 72.7
TAR629G1123 Trochodendron aralioides HOM05D001122 ORTHO05D001877 3.5e-06 54.3 33 72.7
TAR636G1426 Trochodendron aralioides HOM05D001122 ORTHO05D001877 3.5e-06 54.3 33 72.7
Sp5g10560 Schrenkiella parvula HOM05D001122 ORTHO05D001877 4.6e-06 53.9 28 78.6
AT2G38370 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 6.0e-06 53.5 42 61.9
C03p27020 Brassica napus HOM05D001122 ORTHO05D001877 6.0e-06 53.5 60 46.7
MD01G1163200 Malus domestica HOM05D001122 ORTHO05D001877 6.0e-06 53.5 36 69.4
Medtr5g083980 Medicago truncatula HOM05D001122 ORTHO05D001877 6.0e-06 53.5 38 65.8
QL08p064498 Quercus lobata HOM05D001122 ORTHO05D001877 6.0e-06 53.5 35 71.4
Sp4g20690 Schrenkiella parvula HOM05D001122 ORTHO05D001877 6.0e-06 53.5 43 58.1
VMungo0647G1783 Vigna mungo HOM05D001122 ORTHO05D001877 6.0e-06 53.5 36 72.2
MBI15_g27352_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D001877 7.8e-06 53.1 28 85.7
Phvul.008G218300 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 7.8e-06 53.1 36 72.2
TPR.G31629 Trifolium pratense HOM05D001122 ORTHO05D001877 7.8e-06 53.1 35 71.4


User provided reference genes

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