Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 7.4e-77 290.4 143 100.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.3e-70 268.9 143 90.9
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.5e-69 266.2 143 88.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.8e-65 251.5 140 86.4
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 3.8e-65 251.5 143 85.3
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.1e-64 250.0 140 86.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 8.0e-63 243.8 143 84.6
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.8e-62 242.7 137 83.2
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 3.3e-61 238.4 140 82.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.2e-60 235.7 143 77.6
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.7e-60 235.0 143 78.3
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 6.3e-60 234.2 140 79.3
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 4.1e-59 231.5 143 76.9
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 7.0e-59 230.7 143 76.9
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.0e-58 229.2 143 76.2
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 5.9e-58 227.6 143 76.2
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.7e-57 226.1 141 75.9
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.8e-57 224.9 141 75.2
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.1e-56 223.4 141 74.5
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 1.1e-56 223.4 141 75.2
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 5.5e-56 221.1 141 74.5
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.2e-55 219.9 138 75.4
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.2e-55 219.9 141 73.8
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.7e-55 218.8 141 73.0
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 6.1e-55 217.6 141 72.3
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 6.1e-55 217.6 141 72.3
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.1e-55 217.6 141 73.8
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 6.1e-55 217.6 141 73.8
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 4.0e-54 214.9 141 72.3
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 4.0e-54 214.9 143 70.6
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 6.7e-54 214.2 140 71.4
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.5e-53 213.0 141 71.6
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 7.5e-53 210.7 141 70.2
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 7.5e-53 210.7 141 70.2
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 69.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 9.7e-53 210.3 141 70.9
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 70.2
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 72.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 2.2e-52 209.1 141 71.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 2.2e-52 209.1 141 68.8
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 2.2e-52 209.1 141 69.5
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.2e-52 209.1 141 69.5
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 2.8e-52 208.8 141 70.9
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.8e-52 208.8 138 70.3
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.8e-52 208.8 141 70.9
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 70.9
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 3.7e-52 208.4 141 69.5
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 70.4
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 4.8e-52 208.0 141 68.8
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 70.2
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 70.2
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 6.3e-52 207.6 138 70.3
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 71.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 6.3e-52 207.6 141 70.2
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.1e-51 206.8 138 70.3
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 68.8
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 70.2
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 68.8
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 68.1
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 69.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 68.8
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 68.8
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 68.1
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 69.5
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 69.5
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 68.8
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 68.8
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.1e-51 205.3 141 68.8
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.1e-51 204.9 141 68.8
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.1e-51 204.9 141 68.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 4.1e-51 204.9 135 70.4
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 5.3e-51 204.5 145 68.3
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 68.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 5.3e-51 204.5 141 68.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 7.0e-51 204.1 141 66.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.0e-51 204.1 145 68.3
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.0e-51 204.1 141 67.4
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.0e-51 204.1 141 68.8
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 7.0e-51 204.1 141 69.5
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 9.1e-51 203.8 141 68.1
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 9.1e-51 203.8 141 68.1
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 67.6
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.0e-50 202.6 141 68.1
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.0e-50 202.6 141 67.4
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 2.0e-50 202.6 141 67.4
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.7e-50 202.2 141 67.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.5e-50 201.8 141 68.8
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.5e-50 201.8 143 66.4
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 3.5e-50 201.8 141 68.1
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 3.5e-50 201.8 141 68.1
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 3.5e-50 201.8 141 68.1
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 3.5e-50 201.8 141 66.0
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 5.9e-50 201.1 138 65.9
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 7.7e-50 200.7 135 71.1
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.7e-49 199.5 141 66.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.7e-49 199.5 141 66.0
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-49 199.5 141 67.4
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.7e-49 199.5 141 67.4
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.7e-49 199.5 141 66.0
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 5.0e-49 198.0 143 65.7
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 8.5e-49 197.2 141 66.7
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 8.5e-49 197.2 141 65.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 8.5e-49 197.2 140 65.0
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.9e-48 196.1 141 66.7
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 3.2e-48 195.3 162 61.7
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 3.2e-48 195.3 141 64.5
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.2e-48 194.9 141 65.2
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 5.5e-48 194.5 137 67.2
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 7.2e-48 194.1 143 64.3
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 9.4e-48 193.7 140 68.6
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 9.4e-48 193.7 143 64.3
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 9.4e-48 193.7 143 64.3
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 9.4e-48 193.7 141 65.2
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.7e-47 191.4 141 63.8
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 6.1e-47 191.0 143 61.5
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.0e-46 190.3 192 53.6
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.0e-46 190.3 192 53.6
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.4e-46 189.9 142 64.1
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.8e-46 189.5 146 65.1
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 5.2e-46 188.0 146 65.8
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.8e-46 187.6 169 56.2
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.0e-45 186.0 141 66.7
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 4.4e-45 184.9 141 64.5
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 5.7e-45 184.5 138 64.5
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 9.8e-45 183.7 141 60.3
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.3e-44 183.3 141 63.1
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 4.8e-44 181.4 190 49.5
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 4.8e-44 181.4 135 61.5
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 6.3e-44 181.0 141 61.0
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 6.3e-44 181.0 132 63.6
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 6.3e-44 181.0 132 62.9
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 3.1e-43 178.7 116 72.4
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 7.0e-43 177.6 141 62.4
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 9.1e-43 177.2 141 58.2
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 4.5e-42 174.9 141 58.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 7.7e-42 174.1 147 62.6
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.3e-41 173.3 143 60.8
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 2.3e-41 172.6 141 59.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.6e-39 166.4 139 59.0
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.7e-39 164.9 174 51.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.0e-38 163.7 141 57.4
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 8.9e-38 160.6 120 61.7
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.6e-37 159.1 141 57.4
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.4e-37 158.7 120 60.8
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 5.4e-35 151.4 124 60.5
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.8e-34 147.5 134 56.7
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.7e-33 146.4 107 63.6
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 8.6e-33 144.1 141 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 1.5e-32 143.3 138 49.3
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.9e-32 142.9 138 53.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.5e-32 140.6 138 51.4
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-31 140.2 138 51.4
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 8.0e-31 137.5 288 34.0
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 3.0e-30 135.6 119 54.6
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 7.0e-27 124.4 116 52.6
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.3e-22 109.4 73 67.1
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 6.4e-20 101.3 67 67.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.4e-19 100.1 80 60.0
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.4e-19 99.4 103 50.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.4e-19 99.4 103 50.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.4e-19 99.4 103 50.5
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.2e-19 99.0 79 59.5
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 9.2e-19 97.4 116 43.1
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.6e-18 95.1 114 46.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 3.0e-17 92.4 67 64.2
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 7.3e-16 87.8 87 50.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 9.5e-16 87.4 123 40.7
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 6.2e-15 84.7 59 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 6.2e-15 84.7 59 66.1
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 6.8e-14 81.3 111 44.1
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 1.7e-12 76.6 114 43.0
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.9e-12 75.9 76 48.7
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 9.2e-11 70.9 76 46.1
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.2e-10 70.5 121 37.2
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.7e-09 66.6 40 67.5
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.0e-09 65.9 65 50.8
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 3.3e-08 62.4 65 47.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.8e-07 59.3 41 65.9
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.4e-06 57.0 39 64.1
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 1.4e-06 57.0 34 73.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 3.1e-06 55.8 34 70.6
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 4.0e-06 55.5 50 50.0
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 5.2e-06 55.1 84 38.1


User provided reference genes

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