Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29460 Trifolium pratense HOM05D000013 ORTHO05D006595 1.8e-31 138.7 73 100.0
TPR.G13419 Trifolium pratense HOM05D000013 ORTHO05D000011 4.9e-24 114.0 63 95.2
Medtr7g056663 Medicago truncatula HOM05D000013 ORTHO05D000011 5.9e-22 107.1 60 91.7
Lj1g0027360 Lotus japonicus HOM05D000013 ORTHO05D000011 3.7e-16 87.8 60 73.3
Glyma.08G352200 Glycine max HOM05D000013 ORTHO05D000011 2.4e-15 85.1 60 75.0
Phvul.008G126800 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 2.4e-15 85.1 60 75.0
VMungo1383G3482 Vigna mungo HOM05D000013 ORTHO05D000011 7.0e-15 83.6 60 75.0
TPR.G39419 Trifolium pratense HOM05D000013 ORTHO05D006595 2.0e-14 82.0 60 75.0
Phvul.008G127237 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 1.0e-13 79.7 61 68.9
TPR.G13430 Trifolium pratense HOM05D000013 ORTHO05D000011 1.7e-13 79.0 63 68.3
Medtr7g056620 Medicago truncatula HOM05D000013 ORTHO05D006595 2.9e-13 78.2 60 70.0
TPR.G21450 Trifolium pratense HOM05D000013 ORTHO05D000011 3.9e-13 77.8 60 70.0
Medtr7g056510 Medicago truncatula HOM05D000013 ORTHO05D000011 5.0e-13 77.4 60 71.7
Medtr7g056640 Medicago truncatula HOM05D000013 ORTHO05D000011 5.0e-13 77.4 60 70.0
Medtr7g056430 Medicago truncatula HOM05D000013 ORTHO05D000011 1.1e-12 76.3 61 68.9
VMungo1383G0146 Vigna mungo HOM05D000013 ORTHO05D000011 1.1e-12 76.3 61 67.2
Glyma.08G352300 Glycine max HOM05D000013 ORTHO05D000011 1.9e-12 75.5 60 71.7
Medtr7g056590 Medicago truncatula HOM05D000013 ORTHO05D000011 2.5e-12 75.1 60 66.7
Medtr7g056680 Medicago truncatula HOM05D000013 ORTHO05D000011 2.5e-12 75.1 60 68.3
Medtr7g056667 Medicago truncatula HOM05D000013 ORTHO05D000011 3.3e-12 74.7 60 73.3
TPR.G14514 Trifolium pratense HOM05D000013 ORTHO05D000011 3.3e-12 74.7 61 67.2
VMungo1383G3083 Vigna mungo HOM05D000013 ORTHO05D000011 4.3e-12 74.3 60 63.3
Medtr7g056450 Medicago truncatula HOM05D000013 ORTHO05D000011 5.6e-12 73.9 61 63.9
Phvul.008G127100 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 5.6e-12 73.9 60 63.3
TPR.G13432 Trifolium pratense HOM05D000013 ORTHO05D000011 9.5e-12 73.2 60 66.7
TPR.G8560 Trifolium pratense HOM05D000013 ORTHO05D000011 1.2e-11 72.8 56 67.9
TPR.G21465 Trifolium pratense HOM05D000013 ORTHO05D006595 2.1e-11 72.0 63 63.5
Medtr7g056650 Medicago truncatula HOM05D000013 ORTHO05D000011 6.1e-11 70.5 56 67.9
TPR.G14524 Trifolium pratense HOM05D000013 ORTHO05D000011 6.1e-11 70.5 60 65.0
Ca_27903_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 8.0e-11 70.1 61 63.9
Psat3g147280 Pisum sativum HOM05D000013 ORTHO05D000011 1.0e-10 69.7 60 60.0
TPR.G13420 Trifolium pratense HOM05D000013 ORTHO05D000011 1.0e-10 69.7 60 65.0
TPR.G14515 Trifolium pratense HOM05D000013 ORTHO05D000011 1.4e-10 69.3 61 60.7
Lalb_Chr20g0122471 Lupinus albus HOM05D000013 ORTHO05D000011 2.3e-10 68.6 60 61.7
Medtr7g056623 Medicago truncatula HOM05D000013 ORTHO05D000011 4.0e-10 67.8 52 67.3
Phvul.008G127374 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 4.0e-10 67.8 60 65.0
Glyma.13G248700 Glycine max HOM05D000013 ORTHO05D000011 5.2e-10 67.4 60 58.3
VMungo0540G1997 Vigna mungo HOM05D000013 ORTHO05D000011 6.8e-10 67.0 60 56.7
arahy.Tifrunner.gnm1.ann1.MJKS4A Arachis hypogaea HOM05D000013 ORTHO05D000011 8.9e-10 66.6 60 63.3
arahy.Tifrunner.gnm1.ann1.QG99LK Arachis hypogaea HOM05D000013 ORTHO05D000011 1.2e-09 66.2 58 62.1
VMungo1383G1776 Vigna mungo HOM05D000013 ORTHO05D000011 1.2e-09 66.2 63 60.3
Lalb_Chr18g0059011 Lupinus albus HOM05D000013 ORTHO05D029340 1.5e-09 65.9 60 63.3
Medtr7g056647 Medicago truncatula HOM05D000013 ORTHO05D000011 3.4e-09 64.7 63 61.9
Ca_01987_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 5.8e-09 63.9 49 69.4
Lalb_Chr15g0090161 Lupinus albus HOM05D000013 ORTHO05D000011 5.8e-09 63.9 59 59.3
Glyma.13G248300 Glycine max HOM05D000013 ORTHO05D000011 7.5e-09 63.5 66 53.0
Lalb_Chr18g0058981 Lupinus albus HOM05D000013 ORTHO05D006595 9.8e-09 63.2 60 60.0
arahy.Tifrunner.gnm1.ann1.H3XING Arachis hypogaea HOM05D000013 ORTHO05D000011 1.3e-08 62.8 60 60.0
arahy.Tifrunner.gnm1.ann1.CNN114 Arachis hypogaea HOM05D000013 ORTHO05D000011 2.2e-08 62.0 60 56.7
Glyma.08G352100 Glycine max HOM05D000013 ORTHO05D000011 2.2e-08 62.0 54 63.0
Lalb_Chr20g0122461 Lupinus albus HOM05D000013 ORTHO05D000011 2.2e-08 62.0 60 56.7
TPR.G13424 Trifolium pratense HOM05D000013 ORTHO05D006595 2.9e-08 61.6 62 54.8
arahy.Tifrunner.gnm1.ann1.T2LYB2 Arachis hypogaea HOM05D000013 ORTHO05D000011 6.4e-08 60.5 60 55.0
Potri.011G037800 Populus trichocarpa HOM05D000013 ORTHO05D000011 8.3e-08 60.1 60 51.7
PSO541G0288 Papaver somniferum HOM05D000013 ORTHO05D000011 1.1e-07 59.7 60 51.7
Glyma.13G248400 Glycine max HOM05D000013 ORTHO05D000011 1.4e-07 59.3 60 53.3
arahy.Tifrunner.gnm1.ann1.Y7INYT Arachis hypogaea HOM05D000013 ORTHO05D000011 3.2e-07 58.2 60 50.0
Medtr2g011240 Medicago truncatula HOM05D000013 ORTHO05D000011 3.2e-07 58.2 60 56.7
PSO675G8325 Papaver somniferum HOM05D000013 ORTHO05D000011 3.2e-07 58.2 60 51.7
Potri.011G038166 Populus trichocarpa HOM05D000013 ORTHO05D006595 4.1e-07 57.8 60 48.3
Thecc.07G154600 Theobroma cacao HOM05D000013 ORTHO05D000011 4.1e-07 57.8 60 53.3
TPR.G3900 Trifolium pratense HOM05D000013 ORTHO05D006595 4.1e-07 57.8 60 48.3
AT1G11300 Arabidopsis thaliana HOM05D000013 ORTHO05D000011 5.4e-07 57.4 60 51.7
arahy.Tifrunner.gnm1.ann1.C12VKC Arachis hypogaea HOM05D000013 ORTHO05D000011 5.4e-07 57.4 60 50.0
Sp1g09950 Schrenkiella parvula HOM05D000013 ORTHO05D000011 5.4e-07 57.4 60 50.0
TPR.G13425 Trifolium pratense HOM05D000013 ORTHO05D000011 5.4e-07 57.4 48 64.6
AL1G22380 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 7.0e-07 57.0 60 51.7
Potri.011G038512 Populus trichocarpa HOM05D000013 ORTHO05D006595 7.0e-07 57.0 60 48.3
TPR.G29459 Trifolium pratense HOM05D000013 ORTHO05D000011 7.0e-07 57.0 60 53.3
A09p64450 Brassica napus HOM05D000013 ORTHO05D000011 9.2e-07 56.6 66 48.5
Potri.011G038800 Populus trichocarpa HOM05D000013 ORTHO05D000011 9.2e-07 56.6 60 48.3
TPR.G19609 Trifolium pratense HOM05D000013 ORTHO05D000011 9.2e-07 56.6 62 53.2
Ca_07413_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 1.2e-06 56.2 51 58.8
MBI18_g24170_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 1.2e-06 56.2 60 50.0
Psat4g203360 Pisum sativum HOM05D000013 ORTHO05D000011 1.2e-06 56.2 63 46.0
COL.COLO4_37815 Corchorus olitorius HOM05D000013 ORTHO05D000011 1.6e-06 55.8 60 50.0
Medtr8g013600 Medicago truncatula HOM05D000013 ORTHO05D000011 1.6e-06 55.8 60 46.7
Potri.011G038000 Populus trichocarpa HOM05D000013 ORTHO05D000011 1.6e-06 55.8 60 48.3
TPR.G20700 Trifolium pratense HOM05D000013 ORTHO05D000011 1.6e-06 55.8 63 49.2
Potri.011G038401 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.0e-06 55.5 60 48.3
CiPaw.09G081100 Carya illinoinensis HOM05D000022 ORTHO05D000071 2.7e-06 55.1 61 50.8
Potri.011G039300 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.7e-06 55.1 60 53.3
Potri.011G039400 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.7e-06 55.1 60 53.3
TPR.G3958 Trifolium pratense HOM05D000013 ORTHO05D000011 2.7e-06 55.1 60 45.0
Eucgr.E00546 Eucalyptus grandis HOM05D000013 ORTHO05D000011 3.5e-06 54.7 60 46.7
Eucgr.E00549 Eucalyptus grandis HOM05D000013 ORTHO05D000011 3.5e-06 54.7 60 46.7
Phvul.006G194300 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 3.5e-06 54.7 59 50.8
Medtr8g013580 Medicago truncatula HOM05D000013 ORTHO05D000011 4.6e-06 54.3 60 46.7
Nn1g06861 Nelumbo nucifera HOM05D000013 ORTHO05D000011 4.6e-06 54.3 60 48.3
Psat1g210040 Pisum sativum HOM05D000013 ORTHO05D000011 4.6e-06 54.3 61 47.5
Thecc.05G217200 Theobroma cacao HOM05D000013 ORTHO05D000011 4.6e-06 54.3 60 50.0
VMungo0540G1803 Vigna mungo HOM05D000013 ORTHO05D000011 4.6e-06 54.3 59 50.8
arahy.Tifrunner.gnm1.ann1.LLN860 Arachis hypogaea HOM05D000013 ORTHO05D000011 6.0e-06 53.9 61 49.2
Cc08_g04420 Coffea canephora HOM05D000013 ORTHO05D000011 6.0e-06 53.9 60 43.3
Lj6g0010821 Lotus japonicus HOM05D000013 ORTHO05D000011 6.0e-06 53.9 59 47.5
Manes.06G101000 Manihot esculenta HOM05D000013 ORTHO05D000011 6.0e-06 53.9 60 45.0
Potri.011G039100 Populus trichocarpa HOM05D000013 ORTHO05D000011 6.0e-06 53.9 60 51.7
QL05p080012 Quercus lobata HOM05D000013 ORTHO05D000011 6.0e-06 53.9 59 49.2
PSO017G3362 Papaver somniferum HOM05D000013 ORTHO05D000011 7.8e-06 53.5 60 48.3
PSO229G0002 Papaver somniferum HOM05D000013 ORTHO05D000011 7.8e-06 53.5 61 47.5
Potri.011G039200 Populus trichocarpa HOM05D000013 ORTHO05D000011 7.8e-06 53.5 60 51.7
TPR.G32969 Trifolium pratense HOM05D000013 ORTHO05D410468 7.8e-06 53.5 26 100.0


User provided reference genes

Program Settings