Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 1.1e-223 779.6 386 100.0
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 3.3e-180 635.2 344 91.3
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.5e-177 626.3 346 89.9
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.5e-177 626.3 346 89.9
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 9.4e-159 563.9 347 82.1
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.6e-158 563.1 346 82.7
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 3.6e-158 562.0 314 88.9
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 1.8e-157 559.7 348 81.9
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 8.8e-157 557.4 358 80.2
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 8.8e-157 557.4 358 80.2
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 1.5e-156 556.6 346 81.5
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 1.3e-152 543.5 356 77.0
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 7.4e-148 527.7 346 77.2
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 3.8e-144 515.4 346 74.0
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 6.1e-142 508.1 350 73.7
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 3.0e-141 505.8 343 74.9
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 1.5e-140 503.4 344 75.3
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 4.4e-140 501.9 342 75.1
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 1.3e-139 500.4 345 74.2
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.3e-139 500.4 348 73.9
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 2.2e-139 499.6 348 73.9
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 2.8e-139 499.2 343 74.6
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 8.2e-139 497.7 344 74.7
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.4e-138 496.9 345 73.9
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 4.1e-138 495.4 342 73.7
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 1.2e-137 493.8 348 71.8
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.0e-137 493.0 344 73.5
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 7.7e-137 491.1 303 78.2
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 7.7e-137 491.1 303 78.2
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.0e-136 490.7 346 74.0
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.0e-136 490.7 303 78.2
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 2.2e-136 489.6 312 77.6
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 3.8e-136 488.8 304 79.6
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 3.8e-136 488.8 341 73.3
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.8e-136 488.8 303 77.9
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 5.0e-136 488.4 300 79.3
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 6.5e-136 488.0 348 72.1
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 8.5e-136 487.6 344 70.3
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 8.5e-136 487.6 341 72.1
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 3.2e-135 485.7 346 72.3
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.2e-135 485.3 348 70.7
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 4.2e-135 485.3 343 70.0
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 7.2e-135 484.6 303 79.2
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 9.4e-135 484.2 344 70.1
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.2e-134 483.8 343 73.2
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 2.1e-134 483.0 347 72.3
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 4.7e-134 481.9 349 69.3
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 4.7e-134 481.9 341 71.3
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 6.1e-134 481.5 344 70.1
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 8.0e-134 481.1 347 68.6
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 8.0e-134 481.1 355 67.9
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 8.0e-134 481.1 347 68.6
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.0e-133 480.7 351 69.2
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 1.8e-133 479.9 343 70.3
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 6.8e-133 478.0 314 76.1
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 8.8e-133 477.6 347 68.0
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 2.6e-132 476.1 344 70.9
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 2.6e-132 476.1 353 67.7
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 7.5e-132 474.6 351 71.2
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 7.5e-132 474.6 352 68.2
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.7e-131 473.4 348 70.1
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 2.2e-131 473.0 353 67.7
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.2e-131 473.0 355 69.3
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.8e-131 472.6 350 69.1
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.1e-130 470.7 354 67.8
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 3.1e-130 469.2 346 69.4
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 3.1e-130 469.2 341 70.4
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 1.2e-129 467.2 304 78.0
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 2.7e-129 466.1 342 69.0
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 2.7e-129 466.1 344 66.9
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.5e-129 465.7 342 69.0
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.5e-129 465.7 342 69.0
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 7.7e-129 464.5 351 67.5
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 7.7e-129 464.5 427 59.7
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.0e-128 464.2 346 68.2
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 3.8e-128 462.2 348 67.5
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 3.8e-128 462.2 348 67.5
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 1.9e-127 459.9 348 67.2
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 3.2e-127 459.1 303 75.2
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 1.2e-126 457.2 345 66.4
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 6.1e-126 454.9 313 73.5
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 1.0e-125 454.1 345 68.4
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 1.4e-125 453.8 300 75.0
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 4.0e-125 452.2 344 68.0
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 4.0e-125 452.2 370 62.7
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 5.2e-125 451.8 346 67.1
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.2e-124 450.7 342 67.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 1.2e-124 450.7 304 73.4
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 4.4e-124 448.7 343 69.1
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 3.7e-123 445.7 302 73.5
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 3.7e-123 445.7 348 66.4
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 4.1e-122 442.2 313 70.6
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.1e-119 434.1 343 64.4
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 7.3e-119 431.4 342 65.2
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 6.1e-118 428.3 271 79.3
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 8.0e-118 427.9 302 71.5
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.4e-117 427.2 306 69.9
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 2.3e-117 426.4 302 70.9
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 8.9e-117 424.5 349 63.0
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.3e-112 410.6 347 61.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 6.6e-112 408.3 312 65.7
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.2e-110 404.1 320 66.6
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.8e-110 402.9 305 65.2
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 3.6e-110 402.5 315 62.2
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 6.2e-110 401.7 347 60.2
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 8.9e-109 397.9 300 64.7
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.7e-104 383.6 302 63.2
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 2.5e-103 379.8 304 62.2
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 6.2e-102 375.2 232 81.9
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.3e-99 367.5 314 61.8
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.7e-99 367.1 277 69.7
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 6.4e-99 365.2 193 90.2
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 8.3e-99 364.8 327 57.8
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 5.4e-98 362.1 232 78.0
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.5e-97 359.4 227 76.7
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.1e-95 354.4 343 54.5
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 2.5e-95 353.2 304 58.9
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 3.3e-95 352.8 331 54.1
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 7.3e-95 351.7 287 62.0
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 8.1e-94 348.2 193 83.9
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 5.2e-93 345.5 306 55.2
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 8.9e-93 344.7 343 55.1
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.2e-92 344.4 193 85.0
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 4.4e-92 342.4 302 56.0
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 3.3e-87 326.2 301 52.2
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 5.8e-68 262.3 152 80.9
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 3.1e-61 240.0 225 58.2
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.6e-57 227.6 125 84.8
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 6.3e-46 189.1 99 88.9
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.9e-43 180.3 91 89.0
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.5e-42 176.0 213 52.1
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.1e-41 174.1 205 47.3
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.0e-35 155.2 180 52.2
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 1.8e-32 144.4 88 79.5
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 5.2e-32 142.9 101 73.3
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 2.2e-27 127.5 72 79.2
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 5.0e-27 126.3 72 77.8
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.4e-24 118.2 130 51.5
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.2e-23 115.2 87 67.8
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.1e-18 98.6 133 48.1
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 1.8e-13 81.3 43 83.7
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 4.7e-09 66.6 94 43.6
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 5.7e-07 59.7 71 52.1


User provided reference genes

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