Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 6.6e-19 96.3 46 100.0
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.5e-18 95.1 46 97.8
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 2.5e-18 94.4 46 95.7
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 4.3e-18 93.6 46 95.7
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 5.6e-18 93.2 46 95.7
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 5.6e-18 93.2 46 95.7
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 1.2e-17 92.0 46 93.5
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.6e-17 91.7 46 93.5
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 2.1e-17 91.3 46 95.7
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 2.1e-17 91.3 46 89.1
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 2.1e-17 91.3 46 89.1
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-17 91.3 46 93.5
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-17 91.3 46 93.5
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 2.8e-17 90.9 46 89.1
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 2.8e-17 90.9 46 91.3
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.8e-17 90.9 46 91.3
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 3.6e-17 90.5 46 89.1
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 3.6e-17 90.5 46 89.1
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 3.6e-17 90.5 46 91.3
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 4.7e-17 90.1 46 93.5
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 4.7e-17 90.1 46 93.5
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 4.7e-17 90.1 46 89.1
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 6.2e-17 89.7 46 87.0
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.2e-17 89.7 46 89.1
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.2e-17 89.7 46 89.1
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 91.3
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 91.3
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 89.1
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 89.1
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 89.1
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 89.1
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 89.1
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 89.1
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 8.1e-17 89.4 46 91.3
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.1e-16 89.0 46 89.1
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.1e-16 89.0 46 89.1
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 1.1e-16 89.0 46 89.1
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 1.1e-16 89.0 46 89.1
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.4e-16 88.6 46 87.0
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.4e-16 88.6 46 87.0
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 1.4e-16 88.6 46 87.0
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 1.4e-16 88.6 46 87.0
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 1.4e-16 88.6 46 87.0
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 1.8e-16 88.2 46 89.1
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.8e-16 88.2 46 84.8
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 1.8e-16 88.2 46 87.0
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 1.8e-16 88.2 46 89.1
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 2.3e-16 87.8 46 87.0
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 2.3e-16 87.8 46 89.1
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 2.3e-16 87.8 46 87.0
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 2.3e-16 87.8 46 89.1
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 3.1e-16 87.4 46 87.0
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 3.1e-16 87.4 46 87.0
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 4.0e-16 87.0 46 84.8
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 4.0e-16 87.0 46 87.0
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 4.0e-16 87.0 46 82.6
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 4.0e-16 87.0 46 82.6
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 4.0e-16 87.0 46 82.6
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 5.2e-16 86.7 46 82.6
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 6.8e-16 86.3 46 84.8
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.8e-16 86.3 46 84.8
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.8e-16 86.3 46 84.8
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 6.8e-16 86.3 46 84.8
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 6.8e-16 86.3 46 84.8
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 8.9e-16 85.9 46 84.8
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 8.9e-16 85.9 46 80.4
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.0e-15 84.7 46 84.8
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 2.0e-15 84.7 46 82.6
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 80.4
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 80.4
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 3.4e-15 84.0 46 87.0
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 5.8e-15 83.2 46 76.1
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 5.8e-15 83.2 46 80.4
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 7.5e-15 82.8 46 78.3
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 7.5e-15 82.8 46 78.3
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 2.2e-14 81.3 46 82.6
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 2.9e-14 80.9 46 78.3
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.9e-14 80.9 46 78.3
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.9e-14 80.9 46 78.3
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 2.9e-14 80.9 46 76.1
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 2.9e-14 80.9 46 80.4
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.9e-14 80.9 46 78.3
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 8.3e-14 79.3 46 78.3
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.1e-13 79.0 46 76.1
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.4e-13 78.6 46 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 7.1e-13 76.3 45 71.1
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 7.1e-13 76.3 43 79.1
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 9.2e-13 75.9 46 69.6
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 1.2e-12 75.5 46 73.9
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.6e-12 75.1 46 73.9
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 7.3e-10 66.2 33 87.9
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 1.2e-09 65.5 32 90.6
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 2.8e-09 64.3 28 100.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 6.2e-09 63.2 33 84.8
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 1.1e-08 62.4 46 56.5
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 3.1e-08 60.8 29 93.1
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 5.2e-08 60.1 28 92.9
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 8.9e-08 59.3 43 60.5
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 4.4e-07 57.0 28 85.7


User provided reference genes

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