Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 0.0e+00 1411.7 712 100.0
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 7.3e-311 1070.1 745 76.0
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.2e-307 1058.5 741 75.4
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 6.7e-296 1020.4 742 74.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 4.9e-238 828.2 746 63.9
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 8.7e-235 817.4 745 62.3
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.9e-230 802.4 744 62.4
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.2e-222 776.2 746 60.7
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.1e-189 667.5 745 54.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.5e-165 586.6 637 58.2
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.4e-96 358.2 295 68.8
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.9e-96 357.8 295 68.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.0e-82 311.2 841 33.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 4.5e-82 310.1 430 46.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.0e-81 306.6 430 45.6
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 8.8e-78 295.8 726 33.7
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 7.7e-74 282.7 763 33.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 4.2e-72 276.9 430 41.4
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 5.5e-72 276.6 837 30.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 8.0e-71 272.7 433 43.0
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 5.2e-70 270.0 802 30.8
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.7e-70 269.6 432 42.4
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 8.8e-70 269.2 432 42.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 4.4e-69 266.9 477 38.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.4e-67 261.2 490 39.8
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 5.3e-67 260.0 725 31.0
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.8e-65 253.8 424 40.1
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.1e-64 252.3 428 40.7
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.5e-64 251.1 558 36.0
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.0e-63 246.1 432 40.5
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.3e-62 244.6 386 40.9
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.0e-62 244.2 414 40.1
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 4.0e-62 243.8 894 28.9
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 2.6e-61 241.1 393 40.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 6.3e-60 236.5 316 44.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 8.3e-60 236.1 742 29.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.4e-59 234.6 725 29.7
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.7e-58 231.1 388 41.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 3.5e-58 230.7 893 28.7
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 7.7e-58 229.6 398 40.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 2.2e-57 228.0 454 37.9
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 5.0e-57 226.9 498 36.7
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 3.6e-55 220.7 760 30.5
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.8e-54 218.4 429 38.0
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.0e-53 214.9 422 37.9
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.3e-52 212.2 373 39.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.2e-52 211.5 445 34.8
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.8e-52 211.1 242 49.6
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 8.3e-52 209.5 884 27.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.1e-51 209.1 724 28.6
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.8e-51 208.4 719 27.8
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.1e-51 207.2 722 28.8
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 7.0e-51 206.5 717 27.5
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 4.5e-50 203.8 722 28.3
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.0e-49 202.6 522 32.4
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-48 199.1 724 28.2
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-48 198.7 724 28.0
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 7.2e-48 196.4 722 28.0
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.1e-47 194.9 110 79.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.4e-46 192.2 718 27.3
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 7.5e-45 186.4 748 27.1
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.3e-44 185.7 396 35.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 2.8e-44 184.5 721 27.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.8e-43 181.8 426 34.3
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 3.2e-43 181.0 415 33.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 7.0e-43 179.9 454 34.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-42 179.1 747 27.0
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 7.8e-42 176.4 724 27.1
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.3e-41 174.9 456 31.8
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.9e-41 174.5 540 29.8
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.1e-40 172.6 468 33.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.5e-40 172.2 739 25.8
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.5e-40 171.4 780 27.7
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.3e-40 170.6 534 29.0
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 7.3e-40 169.9 740 28.8
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 2.8e-39 167.9 408 36.0
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 4.7e-39 167.2 263 37.6
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.4e-38 165.6 734 28.2
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 4.0e-38 164.1 771 26.3
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.0e-38 164.1 783 28.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 5.2e-38 163.7 741 25.6
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.7e-36 158.7 235 40.4
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 2.2e-36 158.3 746 26.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.9e-36 157.9 529 29.5
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 4.9e-36 157.1 200 43.5
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.9e-35 155.2 235 39.1
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.2e-35 154.5 183 43.7
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 4.1e-35 154.1 747 27.4
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 5.4e-35 153.7 355 32.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 9.2e-35 152.9 805 26.5
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.0e-33 149.4 745 25.2
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.0e-33 149.4 271 35.8
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.0e-33 147.9 727 27.1
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 3.0e-33 147.9 735 28.3
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.9e-32 145.2 725 26.9
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.9e-32 145.2 743 26.4
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-32 144.8 735 28.2
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 4.3e-32 144.1 377 34.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.2e-31 142.5 751 26.0
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.1e-31 141.7 633 26.5
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 4.7e-31 140.6 435 31.0
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.1e-30 139.4 254 36.2
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.3e-30 138.3 616 26.0
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.0e-29 135.2 746 25.9
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.2e-28 131.7 715 26.0
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.9e-28 131.3 152 44.7
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.3e-28 129.8 407 29.5
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.2e-26 125.9 542 27.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.1e-24 119.4 744 24.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.2e-23 115.9 372 29.0
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.9e-19 102.1 804 23.1
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 7.1e-19 100.1 745 23.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 4.6e-18 97.4 209 33.5
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.9e-16 92.0 170 40.0
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 3.6e-15 87.8 231 32.9
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.7e-15 87.4 289 27.3
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.8e-14 85.5 271 29.2
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 6.8e-14 83.6 110 42.7
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.4e-11 75.9 109 41.3
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-08 65.9 231 31.2
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.5e-08 65.9 231 31.2
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.9e-08 65.5 284 27.1
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.6e-07 62.4 631 22.8
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.8e-07 60.8 656 22.1
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.1e-06 59.7 97 35.1
Os08g0447500 Oryza sativa ssp. japonica HOM05D033117 ORTHO05D037222 1.4e-06 59.3 401 26.4


User provided reference genes

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