Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29273 Trifolium pratense HOM05D004978 ORTHO05D005621 3.5e-20 100.5 46 100.0
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 6.6e-19 96.3 46 93.5
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 6.6e-19 96.3 46 95.7
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 6.6e-19 96.3 46 95.7
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 1.9e-18 94.7 46 93.5
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 7.3e-18 92.8 46 91.3
Glyma.02G144267 Glycine max HOM05D004978 ORTHO05D005621 1.2e-17 92.0 46 91.3
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 2.8e-17 90.9 46 91.3
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 3.6e-17 90.5 45 93.3
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 4.7e-17 90.1 46 89.1
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 2.3e-16 87.8 46 87.0
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 4.0e-16 87.0 46 87.0
GSVIVG01003121001 Vitis vinifera HOM05D004978 ORTHO05D005621 6.8e-16 86.3 46 84.8
TAR636G0163 Trochodendron aralioides HOM05D004978 ORTHO05D005621 1.2e-15 85.5 46 84.8
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 1.5e-15 85.1 46 82.6
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 2.0e-15 84.7 46 87.0
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 2.0e-15 84.7 46 80.4
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 2.6e-15 84.3 46 82.6
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 4.4e-15 83.6 46 78.3
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 7.5e-15 82.8 46 80.4
Carub.0006s1818 Capsella rubella HOM05D004978 ORTHO05D005621 7.5e-15 82.8 46 80.4
Sc05g0001310 Simmondsia chinensis HOM05D004978 ORTHO05D005621 7.5e-15 82.8 46 78.3
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 9.9e-15 82.4 46 76.1
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 9.9e-15 82.4 46 82.6
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 1.3e-14 82.0 46 82.6
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 1.3e-14 82.0 46 78.3
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 1.7e-14 81.6 46 73.9
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 1.7e-14 81.6 46 80.4
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 1.7e-14 81.6 46 80.4
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 78.3
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 78.3
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 78.3
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 2.2e-14 81.3 41 85.4
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 76.1
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 78.3
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 80.4
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 2.2e-14 81.3 46 80.4
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 2.9e-14 80.9 39 89.7
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 2.9e-14 80.9 46 78.3
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 3.7e-14 80.5 46 76.1
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 3.7e-14 80.5 46 76.1
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 3.7e-14 80.5 49 81.6
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 3.7e-14 80.5 46 76.1
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 3.7e-14 80.5 46 73.9
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 4.9e-14 80.1 46 78.3
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 6.4e-14 79.7 46 78.3
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 6.4e-14 79.7 46 73.9
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 6.4e-14 79.7 46 78.3
MD03G1258000 Malus domestica HOM05D004978 ORTHO05D005621 6.4e-14 79.7 46 78.3
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 6.4e-14 79.7 46 73.9
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 8.3e-14 79.3 46 76.1
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 8.3e-14 79.3 46 76.1
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 1.1e-13 79.0 46 73.9
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.1e-13 79.0 46 71.7
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 1.1e-13 79.0 46 71.7
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 1.4e-13 78.6 45 73.3
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 1.4e-13 78.6 46 78.3
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 1.4e-13 78.6 46 71.7
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.9e-13 78.2 46 71.7
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 2.4e-13 77.8 46 73.9
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 3.2e-13 77.4 41 80.5
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 4.1e-13 77.0 46 73.9
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 5.4e-13 76.6 41 85.4
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 7.1e-13 76.3 40 87.5
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 7.1e-13 76.3 46 71.7
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.1e-13 76.3 40 80.0
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.1e-13 76.3 40 80.0
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.1e-13 76.3 40 80.0
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 9.2e-13 75.9 44 77.3
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 9.2e-13 75.9 46 76.1
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 1.2e-12 75.5 41 80.5
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 1.6e-12 75.1 46 71.7
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 2.7e-12 74.3 40 85.0
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 2.7e-12 74.3 40 82.5
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 2.7e-12 74.3 45 71.1
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 2.7e-12 74.3 45 71.1
SEGI_08858 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 2.7e-12 74.3 45 71.1
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 3.5e-12 73.9 42 76.2
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 4.6e-12 73.6 40 82.5
RcHm_v2.0_Chr6g0289951 Rosa chinensis HOM05D004978 ORTHO05D005621 4.6e-12 73.6 42 76.2
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 6.0e-12 73.2 42 76.2
PGSC0003DMG400019309 Solanum tuberosum HOM05D004978 ORTHO05D005621 6.0e-12 73.2 40 82.5
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.8e-12 72.8 40 77.5
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 7.8e-12 72.8 42 73.8
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 1.7e-11 71.6 42 73.8
EL10Ac5g10492 Beta vulgaris HOM05D004978 ORTHO05D005621 3.0e-11 70.9 40 77.5
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 6.6e-11 69.7 40 75.0
HPP92_027617 Vanilla planifolia HOM05D004978 ORTHO05D005621 6.6e-11 69.7 42 73.8
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 2.5e-10 67.8 42 69.0
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 2.5e-10 67.8 44 70.5
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 3.3e-10 67.4 39 76.9
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 1.2e-09 65.5 39 69.2
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 2.0e-07 58.2 45 53.3
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 2.0e-07 58.2 45 62.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 3.4e-07 57.4 45 60.0
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.3e-06 55.5 41 65.9
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 2.2e-06 54.7 45 55.6


User provided reference genes

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