Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 3.2e-139 498.4 258 100.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 9.2e-94 347.4 248 77.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.9e-91 339.7 262 72.9
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 7.8e-77 291.2 252 63.9
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 3.1e-73 279.3 255 58.0
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.0e-73 278.9 267 56.9
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.4e-72 275.8 266 57.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 3.4e-72 275.8 263 58.9
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 8.4e-71 271.2 266 57.1
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 4.2e-70 268.9 267 59.9
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 3.9e-68 262.3 254 57.9
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.3e-67 258.8 268 54.9
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 4.3e-67 258.8 268 54.9
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 5.6e-67 258.5 254 57.9
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.8e-65 253.4 258 61.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 3.1e-65 252.7 271 53.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.9e-64 247.7 263 55.1
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.2e-62 242.3 260 54.6
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.5e-62 241.9 267 54.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.2e-61 240.7 267 54.7
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.3e-60 237.3 271 53.1
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.8e-60 236.9 266 53.8
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.8e-60 236.9 281 52.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.3e-60 236.5 272 52.9
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 3.0e-60 236.1 262 52.3
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 8.7e-60 234.6 255 52.9
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.9e-59 233.4 258 52.7
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.5e-59 233.0 262 53.1
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 4.3e-59 232.3 274 51.8
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.8e-58 229.6 268 51.5
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 3.7e-58 229.2 258 50.8
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.2e-58 228.4 253 50.6
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-57 227.6 268 51.1
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-57 227.6 253 51.4
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.1e-57 227.6 259 52.5
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.4e-57 227.3 265 51.7
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.8e-57 226.9 271 50.9
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.8e-57 226.9 266 50.8
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.8e-57 226.9 253 50.6
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.8e-57 226.9 261 51.7
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-57 226.5 253 50.6
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-57 226.5 253 50.6
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.4e-57 226.5 251 50.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 4.0e-57 225.7 251 51.4
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 6.9e-57 224.9 259 50.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.0e-57 224.6 253 50.6
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.2e-56 224.2 264 49.6
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.2e-56 224.2 251 54.6
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.0e-56 223.4 271 50.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.6e-56 223.0 258 51.9
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.6e-56 223.0 262 53.1
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.4e-56 222.6 275 48.0
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 4.5e-56 222.2 263 52.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.8e-56 221.9 258 51.6
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.3e-55 220.7 262 51.5
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.9e-55 219.5 257 49.8
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 4.9e-55 218.8 255 53.7
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.9e-54 216.9 255 51.4
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 5.5e-54 215.3 261 49.4
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 7.1e-54 214.9 262 48.9
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 7.1e-54 214.9 285 46.7
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.2e-53 214.2 249 50.2
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.2e-53 214.2 255 50.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.2e-53 214.2 252 49.6
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.1e-53 213.4 257 50.6
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.5e-51 207.2 257 48.6
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 4.3e-51 205.7 263 49.8
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.6e-50 203.8 258 47.3
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 2.1e-50 203.4 264 45.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.8e-50 202.2 256 47.3
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 8.2e-50 201.4 257 48.2
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.2e-50 201.4 261 46.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.4e-49 200.7 254 45.7
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.8e-49 200.3 248 47.2
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.1e-49 199.1 218 51.4
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.1e-49 199.1 263 45.6
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.9e-49 198.4 264 50.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.0e-49 198.0 218 50.5
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.6e-48 196.4 263 45.2
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 5.9e-48 195.3 263 44.5
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.6e-48 194.9 263 44.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.7e-47 193.7 217 53.9
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-47 193.4 248 48.8
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 5.0e-47 192.2 270 44.8
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 8.4e-47 191.4 263 43.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.1e-46 191.0 240 47.9
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.4e-46 190.7 246 45.1
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.9e-46 190.3 240 49.2
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 3.2e-46 189.5 240 46.2
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.2e-46 189.1 244 45.1
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.2e-46 189.1 260 44.2
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 9.3e-46 188.0 240 48.8
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.2e-45 187.6 260 41.9
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.6e-45 187.2 238 46.6
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.1e-45 186.8 250 42.8
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.1e-45 186.8 270 42.2
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.3e-44 184.1 240 46.2
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.3e-44 183.3 252 44.8
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.0e-44 183.0 247 47.4
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.0e-44 183.0 244 45.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 5.1e-44 182.2 245 44.1
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 5.1e-44 182.2 264 44.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-43 181.0 264 43.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.9e-43 180.3 257 42.8
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.9e-43 180.3 119 78.2
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.3e-43 179.5 240 44.6
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.3e-43 179.5 240 44.6
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.3e-43 179.5 277 40.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.3e-43 179.1 277 40.4
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.8e-42 176.4 246 43.9
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 3.7e-42 176.0 258 43.0
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.8e-42 175.6 120 74.2
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 8.2e-42 174.9 256 43.0
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.4e-41 173.3 248 45.2
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.1e-41 172.9 252 44.0
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 9.0e-41 171.4 245 42.9
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.2e-40 171.0 245 44.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.5e-40 170.6 245 42.4
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.6e-40 169.9 242 41.7
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 5.9e-40 168.7 247 44.1
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.7e-39 167.2 168 51.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.9e-39 166.4 250 40.4
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.0e-39 165.6 255 40.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.4e-38 164.1 248 42.3
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.5e-38 163.3 256 41.0
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 5.5e-38 162.2 250 39.2
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 1.2e-37 161.0 244 43.4
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.1e-37 158.7 171 50.3
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 7.9e-37 158.3 281 39.5
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-36 157.5 171 49.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.0e-36 156.4 105 71.4
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 3.0e-36 156.4 171 48.5
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.7e-35 151.4 171 46.8
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 9.7e-35 151.4 171 46.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 9.7e-35 151.4 171 46.8
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 4.8e-34 149.1 222 40.1
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.4e-33 147.5 171 45.6
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-32 144.4 175 44.6
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.6e-32 143.3 253 37.9
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.7e-31 140.6 157 47.1
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.9e-31 139.8 152 51.3
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.9e-30 137.1 164 48.2
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 3.6e-29 132.9 152 43.4
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 5.7e-27 125.6 246 34.6
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-25 120.9 130 46.2
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.0e-25 118.6 202 40.1
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 2.1e-21 107.1 108 45.4
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.0e-20 104.8 82 62.2
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.1e-17 93.2 128 37.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.3e-15 87.8 131 35.1
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 6.5e-15 85.5 84 44.0
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.1e-14 84.7 172 31.4
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.5e-14 83.6 147 34.7
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 7.2e-14 82.0 146 32.2
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.6e-13 80.9 70 51.4
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 5.2e-12 75.9 155 38.7
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 3.5e-08 63.2 248 26.2


User provided reference genes

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