Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.9e-93 345.9 184 100.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.3e-61 238.8 177 71.2
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 8.1e-52 207.6 162 67.3
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 3.4e-50 202.2 161 68.3
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.2e-49 199.5 167 62.3
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.9e-48 196.4 166 62.7
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.2e-48 195.3 170 64.7
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 5.4e-48 194.9 173 60.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.1e-47 193.0 171 60.2
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 4.6e-47 191.8 173 60.1
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 7.9e-47 191.0 170 59.4
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.8e-46 189.9 177 59.9
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 2.3e-46 189.5 177 58.8
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.0e-46 189.1 170 59.4
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 6.7e-46 188.0 170 59.4
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 6.7e-46 188.0 170 59.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-45 186.8 171 57.9
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.9e-45 186.4 178 55.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 2.5e-45 186.0 173 59.0
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 7.4e-45 184.5 169 60.4
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.3e-44 183.7 169 58.6
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.6e-44 183.3 158 60.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.6e-44 183.3 164 60.4
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.6e-44 183.3 158 59.5
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.6e-44 183.3 171 56.1
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 2.1e-44 183.0 173 56.6
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 3.7e-44 182.2 166 56.0
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 4.8e-44 181.8 176 57.4
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 4.8e-44 181.8 175 55.4
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 4.8e-44 181.8 159 59.1
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.8e-44 181.8 165 58.8
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 8.1e-44 181.0 176 57.4
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 8.1e-44 181.0 165 58.2
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.8e-43 179.9 170 56.5
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.8e-43 179.9 171 56.1
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.4e-43 179.5 169 59.8
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 3.1e-43 179.1 168 55.4
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.0e-43 178.7 178 53.9
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.3e-43 178.3 176 55.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 6.9e-43 177.9 176 55.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 9.0e-43 177.6 172 54.7
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.5e-42 176.8 171 55.6
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.0e-42 176.4 167 57.5
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.6e-42 176.0 176 54.5
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.6e-42 176.0 175 52.0
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 3.4e-42 175.6 164 56.1
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 3.4e-42 175.6 178 52.8
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 4.5e-42 175.3 176 55.1
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 4.5e-42 175.3 203 51.2
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 7.6e-42 174.5 167 56.3
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 7.6e-42 174.5 167 56.3
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.0e-41 174.1 170 55.9
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.0e-41 174.1 167 56.3
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.0e-41 174.1 172 54.1
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.0e-41 174.1 158 58.2
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.7e-41 173.3 158 57.6
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.9e-41 172.6 175 55.4
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 3.8e-41 172.2 165 56.4
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 4.9e-41 171.8 180 53.3
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.9e-41 171.8 160 57.5
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.5e-41 171.4 173 55.5
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 8.4e-41 171.0 162 53.7
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.9e-40 169.9 165 55.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.5e-40 169.5 169 53.3
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.5e-40 169.5 176 53.4
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.5e-40 168.3 169 53.3
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 5.5e-40 168.3 138 60.9
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.1e-40 167.9 167 52.1
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 7.1e-40 167.9 159 54.1
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 7.1e-40 167.9 172 53.5
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-39 167.2 168 56.0
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.6e-39 166.8 162 56.2
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.6e-39 166.8 180 53.3
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.6e-39 166.8 180 53.3
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.1e-39 166.4 139 59.0
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.7e-39 166.0 160 56.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 4.6e-39 165.2 161 52.8
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 6.0e-39 164.9 159 56.0
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 7.9e-39 164.5 162 56.8
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 7.9e-39 164.5 125 61.6
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 7.9e-39 164.5 170 53.5
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.3e-38 163.7 167 50.9
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.8e-38 163.3 157 52.9
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 3.9e-38 162.2 162 54.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 5.1e-38 161.8 173 53.8
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.7e-37 158.3 157 51.6
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.7e-37 158.3 157 51.6
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.4e-34 149.1 169 50.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.2e-33 146.4 141 58.2
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 2.9e-33 146.0 182 44.5
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.0e-33 145.2 142 57.0
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 8.4e-33 144.4 161 49.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.3e-30 136.3 179 45.3
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 8.7e-30 134.4 160 50.0
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 8.7e-30 134.4 118 57.6
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 4.3e-29 132.1 165 44.8
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 9.7e-29 131.0 161 44.7
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.3e-28 130.6 161 47.8
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 4.8e-28 128.6 158 46.8
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 6.3e-28 128.3 161 46.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 6.3e-28 128.3 161 46.0
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 5.9e-26 121.7 156 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.3e-25 120.6 168 43.5
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.3e-25 120.6 76 77.6
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.1e-24 117.5 157 40.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.1e-24 117.5 169 43.8
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.1e-24 117.5 105 63.8
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.4e-24 117.1 95 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.2e-23 114.0 124 47.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.1e-21 107.5 137 46.0
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.0e-21 106.7 116 51.7
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 7.4e-21 104.8 136 43.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.4e-19 100.5 116 48.3
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.8e-19 100.1 105 55.2
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 2.4e-19 99.8 95 50.5
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.0e-18 96.7 96 57.3
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.6e-18 96.3 106 50.0
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 4.2e-16 89.0 172 36.0
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.9e-14 82.4 82 56.1
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.7e-14 81.6 123 43.1
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.3e-13 79.3 171 35.7
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 3.7e-12 75.9 63 54.0
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.8e-12 75.5 51 68.6
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 3.5e-10 69.3 45 66.7
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 5.9e-10 68.6 123 38.2
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.0e-09 67.8 106 40.6
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.3e-09 67.4 120 32.5
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 5.5e-08 62.0 86 40.7
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 5.5e-08 62.0 83 42.2
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-07 60.8 83 41.0
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 1.2e-07 60.8 83 41.0
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.2e-07 60.8 114 35.1
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 1.0e-06 57.8 43 65.1
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 5.2e-06 55.5 55 43.6


User provided reference genes

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