Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 8.7e-160 567.0 302 100.0
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 2.7e-121 439.1 308 76.3
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 2.5e-119 432.6 306 75.5
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 9.8e-95 350.9 324 62.0
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 7.7e-92 341.3 310 61.0
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 2.6e-87 326.2 310 60.0
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 4.9e-86 322.0 320 59.4
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 2.0e-71 273.5 278 56.8
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.4e-64 250.8 302 46.7
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 4.9e-62 242.3 304 45.1
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 2.1e-60 236.9 309 44.0
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 1.0e-59 234.6 322 44.4
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.3e-59 234.2 293 46.1
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 1.3e-59 234.2 331 42.9
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.7e-59 233.8 300 46.7
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 1.5e-58 230.7 298 47.3
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 5.6e-58 228.8 328 44.8
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 9.5e-58 228.0 349 41.8
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 1.2e-57 227.6 321 44.5
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 4.7e-57 225.7 340 43.8
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 8.9e-56 221.5 307 43.0
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 1.5e-55 220.7 328 42.1
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 4.4e-55 219.2 319 42.0
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 9.9e-55 218.0 340 40.6
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 1.7e-54 217.2 332 41.3
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 2.4e-53 213.4 312 41.3
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 1.5e-50 204.1 322 41.6
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.6e-49 199.5 315 38.7
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 1.1e-48 198.0 313 40.9
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 1.4e-48 197.6 315 39.7
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.4e-48 197.6 276 42.8
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.4e-47 192.6 315 39.0
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 2.2e-46 190.3 320 37.5
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 3.8e-46 189.5 313 38.3
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 3.8e-46 189.5 306 38.2
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 6.4e-46 188.7 319 37.6
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 2.4e-45 186.8 308 38.0
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.2e-45 186.4 316 38.6
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.2e-45 186.0 317 37.2
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 4.2e-45 186.0 319 37.9
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 6.0e-44 182.2 303 39.6
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.7e-43 180.6 318 36.5
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 1.1e-42 177.9 312 38.5
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.1e-42 177.9 321 36.1
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.5e-42 177.6 322 37.3
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 4.3e-42 176.0 317 36.9
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-41 173.7 318 36.5
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-41 173.7 314 37.9
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.1e-41 171.8 315 36.8
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 3.1e-40 169.9 314 36.3
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 9.9e-39 164.9 248 43.5
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 4.9e-38 162.5 321 37.1
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 5.4e-37 159.1 313 36.1
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 7.1e-37 158.7 314 33.1
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.6e-36 156.0 304 34.2
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.3e-35 154.5 294 38.1
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.3e-35 153.7 315 36.2
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 2.3e-35 153.7 301 33.2
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 5.1e-35 152.5 303 35.0
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 6.6e-35 152.1 314 32.5
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.9e-34 150.6 299 34.8
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 9.6e-34 148.3 317 35.0
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 3.6e-33 146.4 301 33.9
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.8e-32 144.1 304 32.2
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 5.3e-32 142.5 292 32.9
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 2.0e-31 140.6 321 34.6
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 2.6e-31 140.2 292 32.5
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 1.7e-30 137.5 313 33.9
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.8e-30 136.3 292 31.5
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 6.4e-30 135.6 316 33.5
Glyma.05G176900 Glycine max HOM05D003615 ORTHO05D004858 8.4e-30 135.2 222 41.9
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 1.4e-29 134.4 330 31.8
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 2.4e-29 133.7 309 31.7
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 4.2e-29 132.9 206 37.9
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.7e-28 130.2 324 31.8
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 1.0e-27 128.3 286 31.5
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 1.0e-27 128.3 298 32.9
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 3.9e-27 126.3 329 31.3
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 6.7e-27 125.6 326 31.0
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 3.3e-26 123.2 342 28.4
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.3e-26 123.2 307 32.9
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 4.3e-26 122.9 332 31.0
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.3e-26 122.9 302 31.1
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 5.6e-26 122.5 315 30.5
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 7.4e-26 122.1 298 32.2
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.6e-25 120.9 347 28.2
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.1e-25 120.6 347 27.4
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.1e-25 120.6 313 33.2
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.8e-25 119.4 302 30.8
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 1.1e-24 118.2 319 32.9
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 6.9e-24 115.5 361 28.5
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 9.0e-24 115.2 357 28.0
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 9.0e-24 115.2 329 29.5
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 9.0e-24 115.2 333 28.2
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.2e-23 114.8 348 25.9
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 1.2e-23 114.8 226 34.5
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 1.5e-23 114.4 360 28.1
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 2.0e-23 114.0 109 50.5
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.0e-23 114.0 315 30.5
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.6e-23 113.6 337 31.2
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 2.6e-23 113.6 334 29.9
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 3.4e-23 113.2 332 29.8
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 3.4e-23 113.2 361 28.3
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.6e-23 112.1 251 32.7
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 7.6e-23 112.1 315 30.5
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 1.3e-22 111.3 346 27.7
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.7e-22 110.9 333 30.3
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 2.2e-22 110.5 359 28.1
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.9e-22 110.2 305 28.2
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 8.4e-22 108.6 324 28.4
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.4e-21 107.8 336 29.5
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 2.5e-21 107.1 358 29.1
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 3.2e-21 106.7 316 29.1
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 4.2e-21 106.3 349 27.2
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 5.5e-21 105.9 361 28.3
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.6e-20 104.4 309 29.1
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 2.7e-20 103.6 361 25.8
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.3e-19 101.3 325 28.6
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 1.8e-19 100.9 194 34.0
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.8e-19 100.9 110 47.3
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.1e-19 99.4 193 35.8
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 8.7e-19 98.6 194 33.5
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.5e-18 97.8 204 32.4
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 1.9e-18 97.4 305 28.5
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 2.5e-18 97.1 357 26.9
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 2.5e-18 97.1 299 27.8
FAN11G1076 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.3e-18 96.7 231 32.5
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.4e-18 95.5 180 36.1
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.8e-17 93.6 328 25.3
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 4.8e-17 92.8 191 28.3
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 6.3e-17 92.4 320 28.4
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 1.1e-16 91.7 210 31.4
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.1e-16 90.1 321 27.7
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.0e-15 87.4 320 30.3
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 2.2e-14 84.0 84 48.8
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 5.0e-14 82.8 284 26.1
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 5.0e-14 82.8 195 30.3
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 5.0e-14 82.8 291 26.1
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.1e-13 81.6 113 37.2
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 5.5e-13 79.3 224 31.2
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 7.2e-13 79.0 328 25.6
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 3.5e-12 76.6 96 41.7
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 6.1e-12 75.9 113 36.3
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.3e-11 73.9 222 29.3
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 3.0e-11 73.6 223 28.7
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 5.1e-11 72.8 196 32.1
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.1e-10 71.6 339 26.3
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 1.6e-09 67.8 104 37.5
FAN17G0045 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.4e-08 64.7 117 39.3
FvH4_4g34761 Fragaria vesca HOM05D003615 ORTHO05D015110 1.8e-08 64.3 299 26.1
FAN12G3114 Fragaria x ananassa HOM05D003615 ORTHO05D015110 1.8e-08 64.3 299 26.1
BraA09t39587Z Brassica rapa HOM05D003615 ORTHO05D004858 5.3e-08 62.8 178 27.5
Thecc.02G244800 Theobroma cacao HOM05D003615 ORTHO05D004858 6.9e-08 62.4 136 34.6
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 1.5e-07 61.2 90 32.2
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 4.5e-07 59.7 145 35.2
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 5.9e-07 59.3 246 24.4
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 7.7e-07 58.9 167 28.1
Ca_17751_v3 Cicer arietinum L. HOM05D002693 ORTHO05D007571 7.7e-07 58.9 188 30.9
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 1.7e-06 57.8 295 23.4
TPR.G24587 Trifolium pratense HOM05D003615 ORTHO05D004858 1.7e-06 57.8 57 56.1
BcaC05g26283 Brassica carinata HOM05D003615 ORTHO05D004858 2.9e-06 57.0 178 24.7
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 3.8e-06 56.6 295 22.4
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 3.8e-06 56.6 106 32.1
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.0e-06 56.2 62 41.9
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 8.5e-06 55.5 60 46.7


User provided reference genes

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