Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29209 Trifolium pratense HOM05D000009 ORTHO05D030174 1.8e-97 360.1 336 100.0
TPR.G40093 Trifolium pratense HOM05D000009 ORTHO05D000008 1.2e-74 284.3 320 68.8
Medtr6g046570 Medicago truncatula HOM05D000009 ORTHO05D000008 5.6e-51 205.7 308 77.3
Medtr6g046550 Medicago truncatula HOM05D000009 ORTHO05D030174 5.7e-43 179.1 172 68.6
TPR.G15339 Trifolium pratense HOM05D000009 ORTHO05D000008 3.1e-41 173.3 126 75.4
TPR.G32378 Trifolium pratense HOM05D000009 ORTHO05D000008 8.7e-36 155.2 172 54.7
Medtr3g086070 Medicago truncatula HOM05D000009 ORTHO05D000008 6.3e-34 149.1 180 51.1
Medtr0230s0010 Medicago truncatula HOM05D000009 ORTHO05D000008 1.7e-31 141.0 171 50.9
Medtr0144s0010 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-30 137.5 179 48.0
Medtr6g046440 Medicago truncatula HOM05D000009 ORTHO05D000008 2.5e-30 137.1 184 48.4
Medtr0511s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 3.2e-30 136.7 170 52.9
Medtr6g047450 Medicago truncatula HOM05D000009 ORTHO05D000008 3.2e-30 136.7 182 46.2
arahy.Tifrunner.gnm1.ann1.1U71WU Arachis hypogaea HOM05D000009 ORTHO05D000008 4.2e-30 136.3 172 48.3
arahy.Tifrunner.gnm1.ann1.UIPX5Z Arachis hypogaea HOM05D000009 ORTHO05D000008 4.2e-30 136.3 172 48.3
Medtr0133s0030 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-30 135.2 184 53.8
Medtr0133s0020 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-29 134.4 174 48.3
Medtr6g052455 Medicago truncatula HOM05D000009 ORTHO05D000008 6.1e-29 132.5 171 53.2
TPR.G33492 Trifolium pratense HOM05D000009 ORTHO05D000008 1.0e-28 131.7 314 52.2
Medtr8g036195 Medicago truncatula HOM05D000009 ORTHO05D000008 2.3e-28 130.6 181 53.0
Medtr0256s0050 Medicago truncatula HOM05D000009 ORTHO05D000008 3.0e-28 130.2 180 47.2
Phvul.002G131000 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 3.9e-28 129.8 172 52.9
Medtr3g023320 Medicago truncatula HOM05D000009 ORTHO05D000008 6.7e-28 129.0 181 43.6
Medtr6g052760 Medicago truncatula HOM05D000009 ORTHO05D000008 6.7e-28 129.0 174 47.7
Medtr6g046130 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-27 128.3 174 52.3
Lj1g0000456 Lotus japonicus HOM05D000009 ORTHO05D000008 1.5e-27 127.9 142 52.1
arahy.Tifrunner.gnm1.ann1.GB2WAI Arachis hypogaea HOM05D000009 ORTHO05D000008 4.3e-27 126.3 174 43.1
arahy.Tifrunner.gnm1.ann1.QIQ4VJ Arachis hypogaea HOM05D000009 ORTHO05D000008 4.3e-27 126.3 174 43.1
Phvul.002G131200 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 4.3e-27 126.3 172 44.8
arahy.Tifrunner.gnm1.ann1.5YD3B8 Arachis hypogaea HOM05D000009 ORTHO05D000008 5.7e-27 125.9 174 50.6
arahy.Tifrunner.gnm1.ann1.B76PF9 Arachis hypogaea HOM05D000009 ORTHO05D000008 5.7e-27 125.9 174 50.6
Medtr6g046620 Medicago truncatula HOM05D000009 ORTHO05D000008 7.4e-27 125.6 148 52.0
arahy.Tifrunner.gnm1.ann1.BAA5S9 Arachis hypogaea HOM05D000009 ORTHO05D000008 4.8e-26 122.9 174 51.7
arahy.Tifrunner.gnm1.ann1.LD8LM0 Arachis hypogaea HOM05D000009 ORTHO05D000008 4.8e-26 122.9 174 51.7
arahy.Tifrunner.gnm1.ann1.P6QIT2 Arachis hypogaea HOM05D000009 ORTHO05D000008 2.4e-25 120.6 148 47.3
arahy.Tifrunner.gnm1.ann1.UK8PK2 Arachis hypogaea HOM05D000009 ORTHO05D000008 2.4e-25 120.6 148 47.3
Medtr6g046480 Medicago truncatula HOM05D000009 ORTHO05D000008 2.4e-25 120.6 148 52.0
Medtr6g046930 Medicago truncatula HOM05D000009 ORTHO05D000008 5.3e-25 119.4 183 43.7
VMungo1215G0862 Vigna mungo HOM05D000009 ORTHO05D000008 6.9e-25 119.0 174 43.1
Phvul.002G130100 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.5e-24 117.9 172 43.6
arahy.Tifrunner.gnm1.ann1.SH571D Arachis hypogaea HOM05D000009 ORTHO05D000008 3.4e-24 116.7 149 45.6
arahy.Tifrunner.gnm1.ann1.U7BT81 Arachis hypogaea HOM05D000009 ORTHO05D000008 3.4e-24 116.7 149 45.6
Phvul.002G130500 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 3.4e-24 116.7 146 48.6
arahy.Tifrunner.gnm1.ann1.C2BH8Y Arachis hypogaea HOM05D000009 ORTHO05D000008 5.9e-24 115.9 174 52.3
arahy.Tifrunner.gnm1.ann1.MNA3JK Arachis hypogaea HOM05D000009 ORTHO05D000008 5.9e-24 115.9 174 52.3
Phvul.002G129200 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 7.7e-24 115.5 169 47.3
Phvul.002G129700 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 7.7e-24 115.5 169 43.2
Phvul.002G129500 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.3e-23 114.8 172 43.0
VMungo1215G0643 Vigna mungo HOM05D000009 ORTHO05D000008 1.7e-23 114.4 172 43.0
arahy.Tifrunner.gnm1.ann1.23IZS7 Arachis hypogaea HOM05D000009 ORTHO05D000008 2.9e-23 113.6 178 47.8
arahy.Tifrunner.gnm1.ann1.A2XUUV Arachis hypogaea HOM05D000009 ORTHO05D000008 2.9e-23 113.6 178 47.8
arahy.Tifrunner.gnm1.ann1.00IH7J Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-22 111.3 143 44.8
arahy.Tifrunner.gnm1.ann1.ES8K63 Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-22 111.3 143 44.8
arahy.Tifrunner.gnm1.ann1.AV4GH3 Arachis hypogaea HOM05D000009 ORTHO05D000008 3.2e-22 110.2 173 49.7
arahy.Tifrunner.gnm1.ann1.K4R7NK Arachis hypogaea HOM05D000009 ORTHO05D000008 3.2e-22 110.2 173 49.7
Phvul.002G131100 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 4.2e-22 109.8 172 46.5
arahy.Tifrunner.gnm1.ann1.8HC6C5 Arachis hypogaea HOM05D000009 ORTHO05D000008 7.2e-22 109.0 171 43.3
arahy.Tifrunner.gnm1.ann1.VZQ2V7 Arachis hypogaea HOM05D000009 ORTHO05D000008 7.2e-22 109.0 171 43.3
Phvul.002G130666 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 6.1e-21 105.9 173 41.6
Medtr0144s0060 Medicago truncatula HOM05D000009 ORTHO05D000008 1.8e-20 104.4 148 46.6
Medtr6g046750 Medicago truncatula HOM05D000009 ORTHO05D000008 1.8e-20 104.4 146 46.6
Phvul.002G129900 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.5e-19 101.3 171 40.4
Phvul.002G129566 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.7e-19 99.4 170 45.3
Phvul.002G130600 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.7e-19 99.4 167 39.5
VMungo1215G0881 Vigna mungo HOM05D000009 ORTHO05D000008 9.7e-19 98.6 147 44.9
Medtr6g046760 Medicago truncatula HOM05D000009 ORTHO05D000008 2.8e-18 97.1 139 44.6
VMungo1215G3421 Vigna mungo HOM05D000009 ORTHO05D000008 1.8e-17 94.4 172 43.6
TPR.G20861 Trifolium pratense HOM05D000009 ORTHO05D000008 1.5e-16 91.3 189 36.0
TPR.G5098 Trifolium pratense HOM05D000009 ORTHO05D000008 5.9e-16 89.4 189 34.9
Medtr6g046900 Medicago truncatula HOM05D000009 ORTHO05D000008 7.7e-16 89.0 135 45.2
Medtr5g071823 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-15 87.4 187 33.2
Medtr5g071850 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-15 87.4 187 33.2
TPR.G29203 Trifolium pratense HOM05D000009 ORTHO05D000008 2.9e-15 87.0 187 40.6
TPR.G10881 Trifolium pratense HOM05D000009 ORTHO05D000008 5.0e-15 86.3 188 34.6
TPR.G24039 Trifolium pratense HOM05D000009 ORTHO05D000008 5.0e-15 86.3 162 35.8
LjContig00141g0026212 Lotus japonicus HOM05D000009 ORTHO05D000008 1.5e-14 84.7 138 40.6
Phvul.002G130400 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 1.9e-14 84.3 171 36.3
TPR.G10597 Trifolium pratense HOM05D000009 ORTHO05D000008 1.9e-14 84.3 189 34.4
TPR.G24032 Trifolium pratense HOM05D000009 ORTHO05D000008 2.5e-14 84.0 187 34.2
Phvul.002G130300 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 7.2e-14 82.4 118 43.2
LjContig00141g0003319 Lotus japonicus HOM05D000009 ORTHO05D000008 1.6e-13 81.3 161 34.8
Medtr4g126000 Medicago truncatula HOM05D000009 ORTHO05D000008 2.1e-13 80.9 188 35.1
Medtr5g071780 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-13 80.5 193 34.7
CSS0040834 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 8.0e-13 79.0 181 32.6
Medtr5g072140 Medicago truncatula HOM05D000009 ORTHO05D000008 1.4e-12 78.2 188 33.5
Medtr5g071220 Medicago truncatula HOM05D000009 ORTHO05D000008 1.8e-12 77.8 188 33.0
TPR.G5112 Trifolium pratense HOM05D000009 ORTHO05D000008 1.8e-12 77.8 163 36.8
Medtr1g022380 Medicago truncatula HOM05D000009 ORTHO05D000008 5.2e-12 76.3 185 34.6
TPR.G24040 Trifolium pratense HOM05D000009 ORTHO05D000008 6.7e-12 75.9 187 31.0
PGSC0003DMG400008588 Solanum tuberosum HOM05D000009 ORTHO05D000008 8.8e-12 75.5 184 30.4
CSS0043086 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.0e-11 74.3 161 33.5
Ca_05584_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 4.4e-11 73.2 156 35.3
Lj5g0005007 Lotus japonicus HOM05D000009 ORTHO05D000008 4.4e-11 73.2 142 38.0
Medtr5g070960 Medicago truncatula HOM05D000009 ORTHO05D000008 5.7e-11 72.8 187 36.9
Ca_05627_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 9.7e-11 72.0 182 33.5
Medtr4g055630 Medicago truncatula HOM05D000009 ORTHO05D000008 9.7e-11 72.0 188 37.2
Sopen08g024300 Solanum pennellii HOM05D000009 ORTHO05D000008 1.7e-10 71.2 187 29.4
Medtr6g046450 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-10 70.9 198 32.8
LjContig00564g0020474 Lotus japonicus HOM05D000009 ORTHO05D000008 6.3e-10 69.3 154 38.3
CANSAT54G2570 Cannabis sativa HOM05D000009 ORTHO05D000008 8.2e-10 68.9 169 32.5
TPR.G15797 Trifolium pratense HOM05D000009 ORTHO05D000008 8.2e-10 68.9 191 30.9
arahy.Tifrunner.gnm1.ann1.H1MVFQ Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-09 68.2 71 52.1
arahy.Tifrunner.gnm1.ann1.QW6IJC Arachis hypogaea HOM05D000009 ORTHO05D000008 1.4e-09 68.2 71 52.1
arahy.Tifrunner.gnm1.ann1.G38IB6 Arachis hypogaea HOM05D000009 ORTHO05D000008 2.4e-09 67.4 153 32.7
arahy.Tifrunner.gnm1.ann1.IRQ4MV Arachis hypogaea HOM05D000009 ORTHO05D000008 2.4e-09 67.4 143 37.1
arahy.Tifrunner.gnm1.ann1.JK0RBR Arachis hypogaea HOM05D000009 ORTHO05D000008 3.1e-09 67.0 143 37.1
Medtr0511s0010 Medicago truncatula HOM05D000009 ORTHO05D036555 3.1e-09 67.0 86 46.5
Medtr5g071470 Medicago truncatula HOM05D000009 ORTHO05D000008 3.1e-09 67.0 137 35.0
VMungo1215G1696 Vigna mungo HOM05D000009 ORTHO05D030174 3.1e-09 67.0 54 59.3
CANSAT54G0693 Cannabis sativa HOM05D000009 ORTHO05D000008 5.3e-09 66.2 149 34.9
TPR.G28373 Trifolium pratense HOM05D000009 ORTHO05D000008 5.3e-09 66.2 171 31.0
Hma1.2p1_0940F.1_g239670 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 9.1e-09 65.5 155 30.3
Medtr1g023600 Medicago truncatula HOM05D000009 ORTHO05D000008 9.1e-09 65.5 183 28.4
Medtr7g071940 Medicago truncatula HOM05D000009 ORTHO05D000008 9.1e-09 65.5 133 33.8
arahy.Tifrunner.gnm1.ann1.936HGS Arachis hypogaea HOM05D000009 ORTHO05D000008 1.2e-08 65.1 143 35.0
Ciclev10027705m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.6e-08 64.7 184 37.0
Medtr5g071670 Medicago truncatula HOM05D000009 ORTHO05D000008 1.6e-08 64.7 173 35.3
CANSAT64G0522 Cannabis sativa HOM05D000009 ORTHO05D000008 3.5e-08 63.5 169 33.7
Solyc08g075640.4 Solanum lycopersicum HOM05D000009 ORTHO05D000008 3.5e-08 63.5 170 29.4
TPR.G10316 Trifolium pratense HOM05D000002 ORTHO05D000047 3.5e-08 63.5 63 54.0
TPR.G33530 Trifolium pratense HOM05D000002 ORTHO05D030174 4.5e-08 63.2 75 69.3
arahy.Tifrunner.gnm1.ann1.SY9UAE Arachis hypogaea HOM05D000009 ORTHO05D000008 5.9e-08 62.8 143 34.3
arahy.Tifrunner.gnm1.ann1.EM6AHT Arachis hypogaea HOM05D000009 ORTHO05D000008 7.7e-08 62.4 146 30.8
Hma1.2p1_1206F.1_g267000 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.3e-07 61.6 139 33.8
arahy.Tifrunner.gnm1.ann1.LWFC3J Arachis hypogaea HOM05D000009 ORTHO05D000008 2.2e-07 60.8 140 33.6
CANSAT54G2987 Cannabis sativa HOM05D000009 ORTHO05D000008 2.2e-07 60.8 168 31.0
VMungo1215G2192 Vigna mungo HOM05D000009 ORTHO05D000008 2.9e-07 60.5 45 57.8
arahy.Tifrunner.gnm1.ann1.61LYXS Arachis hypogaea HOM05D000009 ORTHO05D000008 3.8e-07 60.1 143 32.9
arahy.Tifrunner.gnm1.ann1.G71LT5 Arachis hypogaea HOM05D000009 ORTHO05D000008 3.8e-07 60.1 64 48.4
arahy.Tifrunner.gnm1.ann1.WPUJ7C Arachis hypogaea HOM05D000009 ORTHO05D000008 3.8e-07 60.1 64 48.4
QL02p065249 Quercus lobata HOM05D000009 ORTHO05D000008 3.8e-07 60.1 184 29.3
vmacro00126 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 3.8e-07 60.1 156 27.6
vmacro23306 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 5.0e-07 59.7 167 29.3
CSS0030658 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 6.5e-07 59.3 136 29.4
arahy.Tifrunner.gnm1.ann1.5F1M32 Arachis hypogaea HOM05D000009 ORTHO05D000008 8.5e-07 58.9 179 28.5
arahy.Tifrunner.gnm1.ann1.9D2PT6 Arachis hypogaea HOM05D000009 ORTHO05D000008 8.5e-07 58.9 179 28.5
CANSAT54G2752 Cannabis sativa HOM05D000009 ORTHO05D000008 8.5e-07 58.9 166 28.9
LjContig00564g0021567 Lotus japonicus HOM05D000009 ORTHO05D000008 8.5e-07 58.9 75 48.0
PGSC0003DMG401030883 Solanum tuberosum HOM05D000009 ORTHO05D000008 8.5e-07 58.9 200 29.5
arahy.Tifrunner.gnm1.ann1.M0V26Z Arachis hypogaea HOM05D000009 ORTHO05D000008 1.1e-06 58.5 143 35.7
Rhsim05G0016700 Rhododendron simsii HOM05D000009 ORTHO05D000008 1.1e-06 58.5 183 26.8
arahy.Tifrunner.gnm1.ann1.U4QDWS Arachis hypogaea HOM05D000009 ORTHO05D000008 1.5e-06 58.2 142 33.8
Gohir.A06G012800 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.5e-06 58.2 200 34.5
LjContig00564g0015988 Lotus japonicus HOM05D000009 ORTHO05D000008 1.5e-06 58.2 89 43.8
arahy.Tifrunner.gnm1.ann1.CD0F2D Arachis hypogaea HOM05D000009 ORTHO05D000008 1.9e-06 57.8 146 28.8
Medtr5g035280 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-06 57.8 163 29.4
Sabra06G0207800 Salix brachista HOM05D000009 ORTHO05D000008 1.9e-06 57.8 171 29.2
CAN.G1269.9 Capsicum annuum HOM05D000009 ORTHO05D000008 3.2e-06 57.0 143 28.0
Ca_04628_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 3.2e-06 57.0 141 29.8
Potri.018G135700 Populus trichocarpa HOM05D000009 ORTHO05D000008 3.2e-06 57.0 138 34.1
Lj2g0005356 Lotus japonicus HOM05D000009 ORTHO05D000008 4.2e-06 56.6 127 30.7
Phvul.002G130000 Phaseolus vulgaris HOM05D000009 ORTHO05D000008 5.5e-06 56.2 138 31.9
CsaV3_7G030780 Cucumis sativus L. HOM05D000009 ORTHO05D000008 7.2e-06 55.8 153 29.4
TAR628G1055 Trochodendron aralioides HOM05D000009 ORTHO05D000008 7.2e-06 55.8 141 32.6
MELO3C027066.2 Cucumis melo HOM05D000009 ORTHO05D000008 9.4e-06 55.5 155 29.7
Lj3g0027437 Lotus japonicus HOM05D000009 ORTHO05D000008 9.4e-06 55.5 146 30.1
Manes.11G129700 Manihot esculenta HOM05D000009 ORTHO05D000008 9.4e-06 55.5 171 29.8
QL11p004429 Quercus lobata HOM05D000009 ORTHO05D000008 9.4e-06 55.5 163 30.7


User provided reference genes

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