Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29191 Trifolium pratense HOM05D003637 ORTHO05D004175 6.9e-53 210.3 102 100.0
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 1.1e-45 186.4 102 90.2
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 5.3e-45 184.1 102 88.2
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 7.0e-45 183.7 102 89.2
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 1.5e-39 166.0 100 80.0
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 2.0e-36 155.6 98 78.6
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 1.0e-35 153.3 102 73.5
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 1.3e-35 152.9 100 73.0
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.3e-35 152.9 100 73.0
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 1.9e-34 149.1 102 74.5
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 2.5e-34 148.7 103 74.8
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 8.0e-33 143.7 103 72.8
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.4e-32 142.9 93 72.0
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 1.4e-32 142.9 93 72.0
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 1.4e-32 142.9 103 72.8
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 2.9e-27 125.2 98 62.2
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 3.8e-27 124.8 98 64.3
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.5e-26 122.9 98 62.2
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 1.9e-26 122.5 98 62.2
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 5.5e-26 120.9 98 61.2
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 5.5e-26 120.9 98 61.2
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 7.2e-26 120.6 98 60.2
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 1.6e-25 119.4 98 58.2
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.6e-25 119.4 98 59.2
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 3.6e-25 118.2 101 57.4
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 3.6e-25 118.2 97 57.7
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 3.6e-25 118.2 98 60.2
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 8.0e-25 117.1 97 56.7
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 8.0e-25 117.1 97 56.7
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 1.0e-24 116.7 99 58.6
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 1.0e-24 116.7 99 58.6
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 1.4e-24 116.3 98 57.1
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.8e-24 115.9 98 54.1
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.8e-24 115.9 98 54.1
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 1.8e-24 115.9 100 54.0
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 2.3e-24 115.5 97 54.6
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 2.3e-24 115.5 101 56.4
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 3.0e-24 115.2 100 59.0
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 3.0e-24 115.2 100 59.0
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 4.0e-24 114.8 100 55.0
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 4.0e-24 114.8 97 57.7
GSVIVG01036287001 Vitis vinifera HOM05D003637 ORTHO05D004175 4.0e-24 114.8 99 57.6
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 4.0e-24 114.8 98 56.1
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 5.2e-24 114.4 97 55.7
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 5.2e-24 114.4 100 57.0
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 5.2e-24 114.4 97 54.6
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 6.8e-24 114.0 100 55.0
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 6.8e-24 114.0 98 55.1
vmacro18731 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 6.8e-24 114.0 100 56.0
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 1.5e-23 112.8 98 58.2
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 2.0e-23 112.5 100 57.0
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 2.6e-23 112.1 97 56.7
Oeu004354.1 Olea europaea HOM05D003637 ORTHO05D004175 3.4e-23 111.7 98 55.1
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 4.4e-23 111.3 100 52.0
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 5.7e-23 110.9 100 52.0
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 5.7e-23 110.9 100 52.0
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 5.7e-23 110.9 97 50.5
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 7.5e-23 110.5 99 58.6
HanXRQChr01g0009571 Helianthus annuus HOM05D003637 ORTHO05D004175 1.3e-22 109.8 100 56.0
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 1.3e-22 109.8 98 54.1
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 2.8e-22 108.6 97 54.6
Nitab4.5_0002446g0120 Nicotiana tabacum HOM05D003637 ORTHO05D004175 3.7e-22 108.2 95 52.6
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 4.9e-22 107.8 100 50.0
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 8.3e-22 107.1 99 54.5
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 1.4e-21 106.3 98 53.1
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 1.4e-21 106.3 99 48.5
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 1.4e-21 106.3 100 50.0
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 1.8e-21 105.9 98 52.0
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 2.4e-21 105.5 97 50.5
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 2.4e-21 105.5 98 55.1
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 3.1e-21 105.1 98 52.0
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 4.1e-21 104.8 98 51.0
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 4.1e-21 104.8 102 50.0
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 5.4e-21 104.4 102 49.0
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 1.2e-20 103.2 97 51.5
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 2.0e-20 102.4 101 51.5
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 2.7e-20 102.1 100 51.0
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 2.7e-20 102.1 98 52.0
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 3.5e-20 101.7 98 51.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 3.5e-20 101.7 98 51.0
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 3.5e-20 101.7 98 52.0
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 5.9e-20 100.9 98 51.0
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 5.9e-20 100.9 101 51.5
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 5.9e-20 100.9 101 50.5
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 1.0e-19 100.1 101 50.5
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 1.0e-19 100.1 100 48.0
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 1.7e-19 99.4 98 48.0
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 2.9e-19 98.6 103 50.5
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 2.9e-19 98.6 96 51.0
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 3.8e-19 98.2 100 50.0
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 3.8e-19 98.2 98 45.9
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 5.0e-19 97.8 95 49.5
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 6.6e-19 97.4 99 50.5
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 6.6e-19 97.4 99 50.5
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 6.6e-19 97.4 99 50.5
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 6.6e-19 97.4 97 49.5
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 6.6e-19 97.4 100 48.0
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 6.6e-19 97.4 100 48.0
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 8.6e-19 97.1 99 50.5
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 1.9e-18 95.9 103 49.5
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 1.9e-18 95.9 103 49.5
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 3.3e-18 95.1 101 50.5
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 5.6e-18 94.4 100 51.0
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 5.6e-18 94.4 81 54.3
Haze_10274 Corylus avellana HOM05D000058 ORTHO05D004175 7.3e-18 94.0 67 64.2
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 9.5e-18 93.6 103 48.5
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 9.5e-18 93.6 97 46.4
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 2.8e-17 92.0 93 48.4
PSO210G6366 Papaver somniferum HOM05D003637 ORTHO05D004175 4.7e-17 91.3 76 57.9
SEGI_15822 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.4e-16 89.7 100 46.0
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 4.0e-16 88.2 103 47.6
Medtr5g091840 Medicago truncatula HOM05D003637 ORTHO05D004175 5.2e-16 87.8 123 46.3
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 8.9e-16 87.0 100 42.0
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 2.0e-15 85.9 99 41.4
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 2.0e-15 85.9 97 42.3
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 1.3e-14 83.2 98 45.9
CDE10G0063 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 4.9e-14 81.3 75 53.3
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 4.1e-13 78.2 71 50.7
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 5.4e-13 77.8 100 36.0
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 3.5e-12 75.1 65 56.9
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 6.0e-12 74.3 100 39.0
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 5.0e-11 71.2 106 37.7
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 5.0e-11 71.2 102 36.3
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 6.6e-11 70.9 101 38.6
BolC1t05878H Brassica oleracea HOM05D003637 ORTHO05D004175 9.5e-10 67.0 103 40.8
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 4.7e-09 64.7 100 36.0
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 1.3e-06 56.6 88 33.0
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 8.3e-06 53.9 44 59.1


User provided reference genes

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