Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29168 Trifolium pratense HOM05D000003 ORTHO05D019305 5.6e-129 464.2 213 100.0
TPR.G12236 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-48 195.7 149 61.1
Lalb_Chr02g0160441 Lupinus albus HOM05D000003 ORTHO05D000004 9.2e-23 111.3 143 38.5
Lalb_Chr12g0209791 Lupinus albus HOM05D000003 ORTHO05D000004 3.0e-21 106.3 150 40.0
TPR.G17328 Trifolium pratense HOM05D000014 ORTHO05D000016 1.5e-20 104.0 85 50.6
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 2.5e-20 103.2 141 39.7
RcHm_v2.0_Chr4g0439261 Rosa chinensis HOM05D000003 ORTHO05D000651 8.0e-19 98.2 148 35.8
RcHm_v2.0_Chr3g0466111 Rosa chinensis HOM05D000003 ORTHO05D000004 8.9e-18 94.7 153 31.4
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 2.0e-17 93.6 141 36.9
TPR.G3470 Trifolium pratense HOM05D000003 ORTHO05D000004 4.4e-17 92.4 147 36.7
RcHm_v2.0_Chr5g0077831 Rosa chinensis HOM05D005989 ORTHO05D011902 5.8e-17 92.0 168 32.7
TPR.G689 Trifolium pratense HOM05D000003 ORTHO05D012124 2.2e-16 90.1 68 60.3
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 4.9e-16 89.0 170 30.6
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-15 87.8 170 30.6
TPR.G19683 Trifolium pratense HOM05D000003 ORTHO05D000004 1.9e-15 87.0 76 47.4
Medtr8g470890 Medicago truncatula HOM05D015419 ORTHO05D016348 2.4e-15 86.7 112 36.6
RcHm_v2.0_Chr3g0455401 Rosa chinensis HOM05D000003 ORTHO05D000004 4.1e-15 85.9 170 30.0
RcHm_v2.0_Chr7g0200601 Rosa chinensis HOM05D000003 ORTHO05D000651 4.1e-15 85.9 117 39.3
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 2.0e-14 83.6 156 29.5
TPR.G14819 Trifolium pratense HOM05D000935 ORTHO05D019305 6.0e-14 82.0 96 39.6
FvH4_2g06951 Fragaria vesca HOM05D000003 ORTHO05D000651 7.8e-14 81.6 139 36.0
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 7.8e-14 81.6 147 34.0
PSO761G0271 Papaver somniferum HOM05D000003 ORTHO05D000651 1.0e-13 81.3 139 33.1
PSO764G0074 Papaver somniferum HOM05D000003 ORTHO05D000651 1.1e-12 77.8 175 26.3
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 1.5e-12 77.4 114 30.7
PSO339G3340 Papaver somniferum HOM05D000003 ORTHO05D000004 1.9e-12 77.0 145 30.3
Ca_24331_v3 Cicer arietinum L. HOM05D015419 ORTHO05D000651 9.5e-12 74.7 119 31.1
PSO782G2807 Papaver somniferum HOM05D000003 ORTHO05D000004 9.5e-12 74.7 139 31.7
Aqoxy2G01857 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.2e-11 74.3 142 30.3
Atru.chr12.1874 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-11 72.8 138 33.3
TPR.G25732 Trifolium pratense HOM05D000003 ORTHO05D019305 3.6e-11 72.8 145 31.7
Atru.chr4.578 Acer truncatum HOM05D000003 ORTHO05D000651 4.7e-11 72.4 160 28.8
Aqoxy1G02934 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.7e-11 72.4 144 31.9
Medtr0070s0030 Medicago truncatula HOM05D015419 ORTHO05D011822 4.7e-11 72.4 99 34.3
PSO339G5824 Papaver somniferum HOM05D000003 ORTHO05D000004 4.7e-11 72.4 147 25.2
PSO210G0543 Papaver somniferum HOM05D000003 ORTHO05D000651 6.2e-11 72.0 139 29.5
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 8.1e-11 71.6 160 28.8
PSO017G7175 Papaver somniferum HOM05D000003 ORTHO05D000004 8.1e-11 71.6 141 31.9
Aqoxy1G02312 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.4e-10 70.9 154 26.0
PSO210G5087 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-10 70.5 144 28.5
PSO675G9208 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-10 70.5 147 25.2
Atru.chr3.1667 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-10 68.9 140 31.4
Atru.chr9.279 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-10 68.9 132 32.6
Glyma.17G164000 Glycine max HOM05D000003 ORTHO05D000004 6.8e-10 68.6 89 40.4
Psat2g068600 Pisum sativum HOM05D000003 ORTHO05D000004 6.8e-10 68.6 157 26.8
Lalb_Chr18g0052071 Lupinus albus HOM05D000003 ORTHO05D000004 1.2e-09 67.8 75 44.0
Medtr1g036830 Medicago truncatula HOM05D022442 ORTHO05D000004 2.6e-09 66.6 73 34.2
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 2.6e-09 66.6 92 37.0
Medtr7g029135 Medicago truncatula HOM05D022442 ORTHO05D036748 2.6e-09 66.6 98 31.6
Aqoxy6G02677 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.4e-09 65.9 168 23.8
PSO675G7763 Papaver somniferum HOM05D000003 ORTHO05D000004 4.4e-09 65.9 186 23.1
PSO063G3933 Papaver somniferum HOM05D000003 ORTHO05D000004 5.8e-09 65.5 139 28.8
Atru.chr4.574 Acer truncatum HOM05D000003 ORTHO05D000004 9.8e-09 64.7 123 31.7
Aqoxy3G01112 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.8e-09 64.7 99 34.3
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.9 154 29.2
PSO210G2084 Papaver somniferum HOM05D000003 ORTHO05D000651 1.7e-08 63.9 132 31.8
PSO478G4139 Papaver somniferum HOM05D000003 ORTHO05D000651 1.7e-08 63.9 129 25.6
TPR.G24966 Trifolium pratense HOM05D019710 ORTHO05D019305 1.7e-08 63.9 62 50.0
PSO210G0092 Papaver somniferum HOM05D000003 ORTHO05D000004 2.2e-08 63.5 208 25.5
RcHm_v2.0_Chr5g0018801 Rosa chinensis HOM05D000003 ORTHO05D000651 2.2e-08 63.5 101 37.6
PSO339G0754 Papaver somniferum HOM05D000003 ORTHO05D000651 2.9e-08 63.2 140 27.1
Aqoxy2G01987 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.7e-08 62.8 131 27.5
FvH4_5g38601 Fragaria vesca HOM05D000003 ORTHO05D000651 3.7e-08 62.8 101 33.7
PSO339G2335 Papaver somniferum HOM05D000003 ORTHO05D000004 4.9e-08 62.4 138 26.1
PSO170G5701 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-07 61.2 128 31.2
TPR.G4160 Trifolium pratense HOM05D014581 ORTHO05D017919 1.1e-07 61.2 36 69.4
Glyma.13G358250 Glycine max HOM05D000003 ORTHO05D000004 1.4e-07 60.8 99 34.3
PSO764G0078 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-07 60.1 98 31.6
PSO170G2229 Papaver somniferum HOM05D000003 ORTHO05D000004 3.2e-07 59.7 100 30.0
Aqoxy1G02491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.1e-07 59.3 130 32.3
PSO339G3967 Papaver somniferum HOM05D000003 ORTHO05D000651 4.1e-07 59.3 144 26.4
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 4.1e-07 59.3 164 28.7
PSO761G0611 Papaver somniferum HOM05D000003 ORTHO05D000004 5.4e-07 58.9 99 33.3
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 9.2e-07 58.2 137 32.1
Aqoxy1G02953 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.2e-06 57.8 130 31.5
PSO541G1306 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-06 57.4 134 26.9
Psat5g220480 Pisum sativum HOM05D015237 ORTHO05D000022 1.6e-06 57.4 148 25.0
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-06 57.0 116 28.4
Sabra10G0111700 Salix brachista HOM05D000003 ORTHO05D000004 3.5e-06 56.2 122 29.5
TPR.G33043 Trifolium pratense HOM05D000024 ORTHO05D000006 3.5e-06 56.2 40 50.0
Atru.chr4.1863 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 55.8 118 30.5
PSO834G0001 Papaver somniferum HOM05D000003 ORTHO05D000651 6.0e-06 55.5 110 29.1
PSO170G1193 Papaver somniferum HOM05D000003 ORTHO05D000651 7.8e-06 55.1 111 27.9


User provided reference genes

Program Settings