Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 5.8e-40 167.2 87 100.0
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 3.9e-20 101.3 58 70.7
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 4.3e-19 97.8 93 58.1
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 4.3e-19 97.8 60 73.3
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 3.6e-18 94.7 68 66.2
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 6.2e-18 94.0 71 56.3
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 8.1e-18 93.6 68 66.2
Medtr7g053460 Medicago truncatula HOM05D007709 ORTHO05D009577 8.1e-18 93.6 64 73.4
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 5.8e-16 87.4 67 56.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 5.4e-14 80.9 65 56.9
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 3.5e-13 78.2 62 51.6
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 6.0e-13 77.4 62 53.2
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 54 59.3
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 54 59.3
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 53 60.4
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 54 59.3
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 54 59.3
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.0e-12 75.1 66 47.0
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 3.9e-12 74.7 68 48.5
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 5.1e-12 74.3 82 43.9
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 5.1e-12 74.3 55 54.5
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 8.7e-12 73.6 67 49.3
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 8.7e-12 73.6 62 46.8
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.1e-11 73.2 90 50.0
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 1.1e-11 73.2 73 45.2
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.5e-11 72.8 60 48.3
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 1.9e-11 72.4 90 47.8
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 4.3e-11 71.2 60 51.7
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 5.6e-11 70.9 56 55.4
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 7.3e-11 70.5 91 47.3
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 7.3e-11 70.5 56 51.8
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 7.3e-11 70.5 71 46.5
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 7.3e-11 70.5 64 50.0
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 7.3e-11 70.5 57 54.4
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 9.6e-11 70.1 91 47.3
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.3e-10 69.7 73 42.5
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.3e-10 69.7 71 45.1
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.6e-10 69.3 55 50.9
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 2.1e-10 68.9 60 46.7
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 2.8e-10 68.6 55 49.1
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 3.6e-10 68.2 64 48.4
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 4.8e-10 67.8 66 43.9
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 4.8e-10 67.8 57 49.1
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 4.8e-10 67.8 46 56.5
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 4.8e-10 67.8 47 59.6
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 6.2e-10 67.4 84 41.7
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 8.1e-10 67.0 60 45.0
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 8.1e-10 67.0 60 45.0
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 8.1e-10 67.0 60 45.0
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.1e-09 66.6 58 48.3
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.8e-09 65.9 72 47.2
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 3.1e-09 65.1 54 48.1
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 3.1e-09 65.1 54 48.1
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 3.1e-09 65.1 54 51.9
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 3.1e-09 65.1 50 52.0
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 4.0e-09 64.7 60 48.3
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 4.0e-09 64.7 53 49.1
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 5.3e-09 64.3 55 49.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 6.9e-09 63.9 58 51.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 9.0e-09 63.5 60 48.3
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 9.0e-09 63.5 48 50.0
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 9.0e-09 63.5 48 50.0
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 9.0e-09 63.5 48 50.0
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.5e-08 62.8 75 42.7
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 1.5e-08 62.8 53 49.1
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 2.6e-08 62.0 67 44.8
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 3.4e-08 61.6 66 47.0
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 3.4e-08 61.6 66 47.0
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 9.9e-08 60.1 60 45.0
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.7e-07 59.3 56 44.6
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.7e-07 59.3 58 48.3
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 2.9e-07 58.5 51 47.1
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 4.9e-07 57.8 64 46.9
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 4.9e-07 57.8 53 45.3
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.4e-06 55.5 82 40.2
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.4e-06 55.5 82 40.2
ClCG02G010380 Citrullus lanatus HOM05D007709 ORTHO05D009577 9.3e-06 53.5 47 48.9
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 9.3e-06 53.5 54 44.4


User provided reference genes

Program Settings