Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.6e-38 162.2 76 100.0
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.0e-21 104.4 51 92.2
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.2e-19 98.6 51 92.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.9e-19 98.2 51 92.2
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.7e-19 97.8 51 90.2
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.7e-19 97.8 51 90.2
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 3.7e-19 97.8 51 90.2
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 6.4e-19 97.1 51 92.2
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.1e-18 96.3 51 88.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.2e-17 92.8 51 84.3
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 2.1e-17 92.0 51 86.3
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.1e-17 92.0 51 86.3
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.6e-17 90.9 51 84.3
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 3.0e-16 88.2 51 78.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 6.6e-16 87.0 50 80.0
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.9e-15 85.5 51 78.4
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.5e-15 85.1 51 78.4
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 3.3e-15 84.7 51 74.5
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 3.3e-15 84.7 51 78.4
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 7.3e-15 83.6 51 76.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 9.5e-15 83.2 52 76.9
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.2e-14 82.8 51 72.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.6e-14 82.4 51 74.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.8e-14 81.6 51 72.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.8e-14 81.6 49 75.5
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.8e-14 81.6 51 74.5
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.8e-14 81.6 51 74.5
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.8e-14 81.6 51 74.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.8e-14 81.6 51 74.5
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 3.6e-14 81.3 49 73.5
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 6.2e-14 80.5 51 70.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 6.2e-14 80.5 51 72.5
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 6.2e-14 80.5 51 72.5
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 6.2e-14 80.5 51 70.6
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.2e-14 80.5 51 74.5
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 8.1e-14 80.1 49 73.5
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 8.1e-14 80.1 49 73.5
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.1e-14 80.1 51 74.5
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.1e-13 79.7 51 70.6
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.1e-13 79.7 51 70.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.4e-13 79.3 51 70.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-13 79.3 51 68.6
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.4e-13 79.3 51 68.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.4e-13 79.3 49 71.4
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.8e-13 79.0 51 72.5
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.8e-13 79.0 49 73.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.4e-13 78.6 51 70.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.4e-13 78.6 49 71.4
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.4e-13 78.6 51 72.5
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.1e-13 78.2 51 70.6
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 4.0e-13 77.8 49 69.4
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.0e-13 77.8 51 70.6
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.0e-13 77.8 51 70.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 4.0e-13 77.8 51 66.7
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 5.2e-13 77.4 51 72.5
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 5.2e-13 77.4 51 68.6
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 6.8e-13 77.0 51 66.7
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 6.8e-13 77.0 49 69.4
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 6.8e-13 77.0 51 74.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 6.8e-13 77.0 51 70.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.8e-13 77.0 51 66.7
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 8.9e-13 76.6 49 71.4
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.9e-13 76.6 51 70.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.2e-12 76.3 51 72.5
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-12 75.9 51 68.6
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.5e-12 75.9 51 66.7
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.6e-12 75.1 49 67.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.6e-12 75.1 51 70.6
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.6e-12 75.1 51 68.6
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 51 66.7
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.4e-12 74.3 51 66.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 5.8e-12 73.9 51 66.7
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 7.6e-12 73.6 51 66.7
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.6e-12 73.6 51 60.8
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.6e-12 73.6 51 62.7
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 9.9e-12 73.2 51 64.7
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.3e-11 72.8 51 66.7
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.2e-11 72.0 51 64.7
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.2e-11 72.0 51 64.7
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 2.9e-11 71.6 51 66.7
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 3.8e-11 71.2 49 59.2
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.8e-11 71.2 51 64.7
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 4.9e-11 70.9 49 63.3
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 66.7
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 6.4e-11 70.5 51 66.7
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 6.4e-11 70.5 51 60.8
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 8.4e-11 70.1 51 64.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 8.4e-11 70.1 51 62.7
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 8.4e-11 70.1 51 62.7
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.1e-10 69.7 51 64.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.4e-10 69.3 51 62.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.4e-10 69.3 50 62.0
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-10 68.9 51 64.7
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.9e-10 68.9 51 62.7
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 3.2e-10 68.2 51 62.7
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-10 68.2 51 64.7
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 3.2e-10 68.2 45 66.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.1e-10 67.8 51 64.7
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 7.1e-10 67.0 51 64.7
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 7.1e-10 67.0 49 59.2
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 9.2e-10 66.6 37 81.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.6e-09 65.9 51 64.7
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.3e-08 62.8 52 59.6
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.3e-08 62.8 51 58.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.7e-08 62.4 51 52.9
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.0e-08 61.6 51 51.0
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 5.1e-08 60.8 51 54.9
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 5.1e-08 60.8 52 55.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 6.6e-08 60.5 51 54.9
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 3.3e-07 58.2 51 51.0
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 4.3e-07 57.8 45 60.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.1e-06 55.5 51 51.0


User provided reference genes

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