Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 2291.2 1167 100.0
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 2036.5 1168 88.1
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 2027.3 1170 89.2
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 2015.0 1168 87.2
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1804.3 1173 79.5
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1792.3 1175 79.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1750.3 1164 76.3
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1714.5 1168 76.4
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1704.5 1170 76.0
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1664.0 1211 73.1
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1612.4 1191 72.9
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1434.1 1164 65.6
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1405.6 1168 63.4
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1402.5 1168 64.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1386.7 1175 62.0
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1383.2 1172 63.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1382.1 1161 63.8
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1380.9 1176 62.9
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1380.2 1162 63.4
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1378.2 1171 63.0
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1370.1 1161 62.5
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1367.8 1175 62.6
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1354.7 837 84.3
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1348.6 1169 62.8
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1337.4 1155 61.0
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1332.8 1163 62.4
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1325.1 1143 60.7
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1323.9 1172 59.5
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1318.1 1166 59.3
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1313.1 1171 58.9
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1310.0 1178 59.1
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1305.4 1208 57.5
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1304.3 1036 63.6
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1303.9 1172 60.1
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1303.1 1156 60.2
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1300.8 1161 61.0
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1299.3 1156 59.9
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1293.9 1177 60.1
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1290.4 1170 59.7
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1285.0 1157 59.6
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1281.2 1154 59.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1276.9 1165 59.2
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1272.3 1036 62.5
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1255.4 1341 54.5
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1249.2 1175 58.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1236.1 1162 57.8
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1231.9 1163 58.2
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1225.3 1125 57.6
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1222.2 1217 55.0
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1219.9 1634 46.0
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1213.0 1158 56.7
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1211.8 1174 55.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1211.8 1168 57.3
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1201.4 1166 57.3
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1196.0 1141 56.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1189.9 1152 56.5
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1179.9 1152 54.8
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1176.0 1166 55.7
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1171.4 1082 59.4
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1170.2 1169 55.1
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1164.4 1151 54.1
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1164.1 1168 54.5
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1161.4 1176 56.0
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1158.7 1156 55.0
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1158.7 1156 55.0
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1155.6 1170 54.7
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1145.2 1186 53.5
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1144.8 1169 54.1
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1143.6 1152 54.7
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1141.3 1191 52.6
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1131.3 1136 55.8
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1130.2 660 86.1
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1129.8 652 86.7
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1129.0 1157 55.4
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1122.5 947 60.7
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1122.1 1150 53.7
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1116.7 1165 54.0
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1115.9 1149 54.0
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1114.0 1002 58.1
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1112.8 1171 52.3
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1101.7 1149 52.1
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1097.0 1107 54.2
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1085.1 1162 52.1
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 7.4e-308 1060.8 1113 51.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.1e-300 1036.9 1187 48.4
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 5.7e-300 1034.6 1057 54.5
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.1e-295 1020.4 633 79.6
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.4e-293 1013.4 1239 47.8
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 5.9e-281 971.5 1151 48.2
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 8.3e-267 924.5 971 52.2
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.2e-259 899.8 1144 45.1
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 5.8e-244 848.6 733 59.6
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.5e-239 833.2 1183 42.7
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 6.2e-238 828.6 717 56.5
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 9.9e-228 794.7 1056 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 9.3e-194 681.8 1158 37.5
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 3.4e-188 663.3 796 48.7
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.9e-186 657.5 1136 37.4
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 5.5e-186 656.0 975 38.6
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.1e-185 654.1 670 53.6
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.8e-176 624.4 1232 36.1
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 2.5e-170 604.0 507 62.1
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.5e-170 604.0 1217 35.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 2.5e-138 497.7 1220 30.2
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 3.3e-114 417.5 431 55.0
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.1e-97 361.7 411 50.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 6.5e-62 243.8 275 44.7
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 4.4e-58 231.1 178 62.4
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 4.0e-35 154.8 116 62.9
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.3e-30 139.0 293 33.8
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.2e-26 126.7 107 60.7
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 8.3e-25 120.6 496 23.8
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 2.7e-23 115.5 81 70.4
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 9.2e-16 90.5 81 58.0
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 2.7e-15 89.0 61 73.8
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 4.7e-12 78.2 85 49.4
Medtr6g074160 Medicago truncatula HOM05D006302 ORTHO05D007960 7.5e-10 70.9 41 78.0
Medtr6g074780 Medicago truncatula HOM05D000005 ORTHO05D000012 7.5e-10 70.9 37 83.8
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.7e-09 69.7 43 69.8
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.4e-08 65.9 71 49.3
Medtr6g478020 Medicago truncatula HOM05D000005 ORTHO05D000012 3.2e-08 65.5 42 71.4
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 5.4e-08 64.7 176 39.8
Medtr6g074790 Medicago truncatula HOM05D006302 ORTHO05D007960 2.0e-07 62.8 46 71.7
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.7e-07 62.4 39 69.2
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 3.9e-06 58.5 36 69.4
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 5.0e-06 58.2 87 40.2
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 5.0e-06 58.2 67 47.8
Medtr6g472240 Medicago truncatula HOM05D006302 ORTHO05D261209 6.6e-06 57.8 69 47.8


User provided reference genes

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