Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.1e-93 346.7 176 100.0
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 2.5e-82 308.9 178 89.3
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 5.0e-67 258.1 179 77.7
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 4.5e-60 235.0 167 76.6
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.0e-56 223.8 168 72.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.4e-56 223.4 168 71.4
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 3.0e-56 222.2 166 71.1
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.2e-56 221.5 176 67.6
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 4.4e-55 218.4 168 71.4
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 2.2e-54 216.1 171 68.4
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.4e-53 213.4 218 56.9
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.4e-53 212.6 193 62.2
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.6e-52 209.9 171 67.3
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.5e-52 208.8 171 67.8
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 4.6e-52 208.4 181 65.2
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 5.9e-52 208.0 174 63.8
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 7.8e-52 207.6 173 65.9
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 3.0e-51 205.7 173 62.4
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 3.9e-51 205.3 169 66.3
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.1e-50 203.8 166 66.3
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 2.5e-50 202.6 168 63.7
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 3.3e-50 202.2 168 66.1
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.3e-50 201.1 170 64.1
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.3e-50 201.1 170 63.5
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.6e-49 199.9 169 63.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 6.2e-49 198.0 169 65.1
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 6.2e-49 198.0 167 62.9
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.8e-48 196.4 168 63.7
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.8e-48 196.4 181 60.2
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.1e-48 195.7 171 67.3
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 5.2e-48 194.9 173 65.3
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 2.0e-47 193.0 170 62.4
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.6e-47 192.6 166 62.7
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.4e-47 192.2 170 62.9
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.4e-47 192.2 170 62.9
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 3.4e-47 192.2 168 61.9
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 9.8e-47 190.7 163 62.6
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.3e-46 190.3 173 63.0
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.9e-45 186.4 173 60.7
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.4e-45 186.0 168 61.3
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 5.4e-45 184.9 179 58.7
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.4e-45 184.9 176 59.1
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 7.0e-45 184.5 158 62.7
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 9.2e-45 184.1 172 60.5
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.6e-44 183.3 167 57.5
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.0e-44 181.4 173 61.3
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 7.8e-44 181.0 185 56.2
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.3e-43 180.3 173 57.8
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.7e-43 179.9 175 56.0
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 5.0e-43 178.3 175 55.4
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 6.6e-43 177.9 175 59.4
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 8.6e-43 177.6 170 55.9
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.5e-42 176.8 153 59.5
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.5e-42 176.8 177 58.2
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.9e-42 176.4 170 57.6
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-42 176.4 170 55.3
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.9e-42 176.4 170 55.3
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.9e-42 176.4 172 55.8
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.9e-42 176.4 180 55.6
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.5e-42 176.0 161 59.6
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 3.3e-42 175.6 163 62.0
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 4.3e-42 175.3 170 54.7
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 5.6e-42 174.9 173 55.5
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 7.3e-42 174.5 170 56.5
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.6e-41 173.3 171 56.7
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 2.1e-41 172.9 169 59.2
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.3e-40 169.5 170 55.9
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 3.1e-40 169.1 169 56.8
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 4.0e-40 168.7 171 53.8
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 4.0e-40 168.7 179 53.6
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-39 167.2 171 53.8
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.5e-39 166.8 169 55.0
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 2.6e-39 166.0 176 52.3
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 5.8e-39 164.9 170 54.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 5.8e-39 164.9 163 53.4
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 9.9e-39 164.1 169 58.6
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.3e-38 163.7 161 55.3
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.2e-38 162.9 160 55.0
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.9e-38 162.5 170 55.9
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 3.7e-38 162.2 180 53.3
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.9e-38 161.8 160 55.6
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 4.9e-38 161.8 156 57.1
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.1e-37 160.6 157 55.4
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.1e-37 160.6 112 75.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.9e-37 159.8 171 53.8
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.4e-37 159.5 103 78.6
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 3.2e-37 159.1 178 52.2
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 4.1e-37 158.7 166 54.2
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 9.2e-37 157.5 163 57.1
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 3.5e-36 155.6 175 50.3
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.6e-36 155.2 241 43.2
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 6.0e-36 154.8 169 53.3
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 7.8e-36 154.5 179 50.8
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 7.8e-36 154.5 179 50.8
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.0e-35 154.1 169 52.1
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.0e-35 154.1 169 52.7
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.0e-35 154.1 179 50.8
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.7e-35 153.3 174 52.3
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 3.9e-35 152.1 168 51.2
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 3.9e-35 152.1 150 56.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 6.6e-35 151.4 167 52.1
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 8.6e-35 151.0 168 50.6
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.1e-34 150.6 170 51.2
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.1e-34 150.6 166 51.2
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.5e-34 150.2 133 60.9
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 3.3e-34 149.1 157 54.1
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 3.3e-34 149.1 179 49.2
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.2e-33 147.1 170 50.0
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.6e-33 146.7 140 57.9
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.8e-33 146.0 130 59.2
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.4e-32 143.7 119 63.9
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.8e-32 143.3 124 59.7
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 6.8e-32 141.4 106 69.8
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 4.4e-31 138.7 176 46.6
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.2e-30 136.3 161 53.4
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 3.8e-30 135.6 130 53.1
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 4.9e-30 135.2 131 54.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 2.4e-29 132.9 172 47.1
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.2e-28 130.6 174 49.4
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.2e-28 130.6 76 85.5
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.1e-28 129.8 167 47.9
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.0e-28 128.3 80 78.8
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 3.9e-27 125.6 106 60.4
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 2.5e-26 122.9 180 41.1
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.2e-25 120.6 106 59.4
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.4e-24 116.3 106 57.5
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.1e-24 115.9 196 40.3
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.0e-19 100.9 103 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.1e-18 97.4 170 38.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.4e-16 90.5 128 43.8
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 6.4e-14 81.6 112 43.8
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 7.1e-13 78.2 102 46.1
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 7.1e-13 78.2 102 46.1
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 9.3e-13 77.8 96 47.9
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 6.0e-12 75.1 135 35.6
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.5e-10 69.7 62 54.8
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 6.2e-09 65.1 132 31.8
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 4.9e-06 55.5 66 47.0


User provided reference genes

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