Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 1.4e-44 182.6 93 100.0
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.7e-37 157.9 82 98.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.1e-28 129.8 82 84.1
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.6e-27 125.9 83 77.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.8e-24 115.2 82 73.2
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 4.7e-24 114.4 85 70.6
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 8.1e-24 113.6 83 72.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 5.2e-23 110.9 85 69.4
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.6e-22 107.1 98 59.2
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.7e-21 104.8 100 59.0
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 6.4e-21 104.0 95 65.3
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.1e-20 103.2 104 54.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.4e-20 102.8 100 58.0
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 7.1e-20 100.5 96 62.5
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 7.1e-20 100.5 95 61.1
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.1e-20 100.5 90 62.2
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.1e-19 99.0 104 53.8
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.7e-19 98.6 96 61.5
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.7e-19 98.6 90 56.7
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.5e-19 98.2 89 64.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 4.6e-19 97.8 87 65.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.6e-19 97.8 87 65.5
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 6.0e-19 97.4 93 54.8
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 7.8e-19 97.1 98 55.1
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.0e-18 96.7 98 59.2
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.0e-18 96.7 93 58.1
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.0e-18 96.7 93 58.1
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.0e-18 96.7 75 70.7
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.3e-18 96.3 93 62.4
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.3e-18 96.3 94 58.5
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.3e-18 96.3 84 64.3
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 3.0e-18 95.1 102 54.9
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 6.6e-18 94.0 100 57.0
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-17 93.2 93 55.9
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.1e-17 93.2 95 56.8
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.5e-17 92.8 93 55.9
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.5e-17 92.8 93 57.0
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.5e-17 92.8 92 57.6
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 2.5e-17 92.0 108 50.9
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.5e-17 92.0 91 58.2
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.3e-17 91.7 78 64.1
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 4.3e-17 91.3 96 56.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 5.6e-17 90.9 86 60.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 5.6e-17 90.9 79 65.8
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 5.6e-17 90.9 97 54.6
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 7.3e-17 90.5 100 50.0
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 9.6e-17 90.1 92 51.1
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 9.6e-17 90.1 93 55.9
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.2e-16 89.7 89 56.2
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.2e-16 89.7 95 57.9
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.8e-16 88.6 103 50.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.8e-16 88.6 95 52.6
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 6.2e-16 87.4 90 54.4
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 8.1e-16 87.0 92 54.3
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.1e-15 86.7 92 48.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.8e-15 85.9 84 61.9
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.8e-15 85.9 101 48.5
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.8e-15 85.9 95 52.6
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.1e-15 85.1 94 54.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 6.8e-15 84.0 102 49.0
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 6.8e-15 84.0 94 53.2
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 6.8e-15 84.0 92 54.3
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 8.9e-15 83.6 92 52.2
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 8.9e-15 83.6 96 47.9
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 8.9e-15 83.6 100 52.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.2e-14 83.2 94 53.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.5e-14 82.8 91 57.1
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.5e-14 82.8 94 53.2
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 2.6e-14 82.0 92 46.7
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.6e-14 82.0 92 46.7
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.4e-14 81.6 94 51.1
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.4e-14 81.6 93 51.6
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.4e-14 81.6 93 51.6
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.4e-14 81.6 93 51.6
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.4e-14 81.6 95 47.4
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 5.8e-14 80.9 93 47.3
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 7.6e-14 80.5 79 58.2
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.3e-13 79.7 93 52.7
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-13 79.7 101 50.5
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-13 79.7 90 56.7
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.7e-13 79.3 84 48.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.2e-13 79.0 103 49.5
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 3.8e-13 78.2 104 49.0
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 6.4e-13 77.4 94 44.7
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 6.4e-13 77.4 70 55.7
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 8.4e-13 77.0 93 50.5
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.1e-12 76.6 105 47.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.1e-12 76.6 90 54.4
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.1e-12 76.6 96 49.0
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-11 72.8 95 47.4
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.1e-11 72.4 47 74.5
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.7e-11 72.0 90 47.8
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 3.5e-11 71.6 53 66.0
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 6.0e-11 70.9 108 40.7
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 6.0e-11 70.9 95 46.3
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 7.8e-11 70.5 103 41.7
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 7.8e-11 70.5 82 52.4
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.7e-10 69.3 47 70.2
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.3e-10 68.9 78 46.2
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 2.3e-10 68.9 63 60.3
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.9e-10 68.2 75 52.0
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 3.9e-10 68.2 68 52.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 3.9e-10 68.2 68 51.5
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 5.1e-10 67.8 68 52.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.9e-09 65.9 98 38.8
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.9e-09 65.9 98 38.8
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 9.6e-09 63.5 99 38.4
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 9.6e-09 63.5 99 38.4
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 9.6e-09 63.5 81 45.7
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.1e-08 62.4 95 43.2
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.8e-08 62.0 95 43.2
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 4.8e-08 61.2 50 62.0
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 6.2e-08 60.8 38 78.9
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-07 60.1 94 40.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.4e-07 59.7 58 50.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 2.4e-07 58.9 92 38.0
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.4e-07 58.9 78 48.7
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 3.1e-07 58.5 46 69.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 9.0e-07 57.0 56 57.1
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.2e-06 56.6 46 58.7
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-06 56.6 49 65.3
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.2e-06 56.6 44 56.8


User provided reference genes

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