Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28903 Trifolium pratense HOM05D002875 ORTHO05D003215 2.3e-114 415.6 214 100.0
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 4.9e-101 371.3 215 89.3
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 1.1e-97 360.1 215 86.5
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 1.2e-94 350.1 215 84.2
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 1.6e-91 339.7 214 82.2
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 9.7e-89 330.5 217 78.8
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 2.8e-88 328.9 217 77.9
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 8.2e-88 327.4 217 78.8
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 3.6e-83 312.0 215 76.7
COL.COLO4_30079 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.1e-79 300.4 216 72.2
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.8e-79 299.7 215 71.2
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 1.8e-79 299.7 215 71.2
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 2.4e-79 299.3 214 71.0
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 4.1e-79 298.5 215 70.7
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 9.1e-79 297.4 215 70.7
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 1.2e-78 297.0 216 71.3
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 1.5e-78 296.6 214 70.6
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 2.6e-78 295.8 215 72.1
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 4.5e-78 295.0 215 70.2
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 7.7e-78 294.3 215 71.6
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 7.7e-78 294.3 214 69.2
FAN18G4336 Fragaria x ananassa HOM05D002875 ORTHO05D003215 7.7e-78 294.3 214 69.2
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 7.7e-78 294.3 214 71.5
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 1.7e-77 293.1 215 70.2
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 1.7e-77 293.1 215 71.2
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 3.8e-77 292.0 214 68.7
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 1.1e-76 290.4 215 70.2
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 1.9e-76 289.7 215 70.2
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 1.9e-76 289.7 214 68.7
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 1.9e-76 289.7 215 70.7
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.5e-76 289.3 214 68.2
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 2.5e-76 289.3 215 69.8
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 2.5e-76 289.3 214 68.7
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 5.5e-76 288.1 215 66.0
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 7.2e-76 287.7 215 69.3
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 9.4e-76 287.3 221 70.1
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 1.2e-75 287.0 214 65.9
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 2.7e-75 285.8 215 67.9
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 3.6e-75 285.4 215 68.8
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 6.1e-75 284.6 222 67.6
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 7.9e-75 284.3 221 68.3
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 1.0e-74 283.9 221 67.0
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 1.4e-74 283.5 221 67.4
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 1.4e-74 283.5 220 67.3
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 1.4e-74 283.5 221 67.0
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 1.8e-74 283.1 215 67.4
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 1.8e-74 283.1 215 66.5
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 1.8e-74 283.1 215 66.5
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 2.3e-74 282.7 214 68.7
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 3.0e-74 282.3 215 68.4
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 3.0e-74 282.3 221 67.4
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 5.1e-74 281.6 220 66.8
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 5.1e-74 281.6 220 66.8
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 5.1e-74 281.6 219 66.7
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 8.8e-74 280.8 221 67.0
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 2.6e-73 279.3 215 67.0
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 3.3e-73 278.9 215 65.1
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 3.3e-73 278.9 215 65.1
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 3.3e-73 278.9 216 69.9
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 3.3e-73 278.9 215 65.6
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 5.7e-73 278.1 214 66.8
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 5.7e-73 278.1 215 69.8
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 7.4e-73 277.7 214 65.9
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 1.3e-72 276.9 216 66.2
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 1.3e-72 276.9 215 67.9
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 1.7e-72 276.6 215 66.0
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 2.2e-72 276.2 214 68.2
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 2.8e-72 275.8 215 66.0
PSO063G4348 Papaver somniferum HOM05D002875 ORTHO05D003215 4.8e-72 275.0 214 67.8
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 4.8e-72 275.0 214 67.8
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 6.3e-72 274.6 220 65.5
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 6.3e-72 274.6 220 65.5
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 8.2e-72 274.2 214 66.8
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 1.1e-71 273.9 215 67.4
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 1.1e-71 273.9 215 66.5
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 1.4e-71 273.5 215 67.4
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 1.8e-71 273.1 214 65.4
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 1.8e-71 273.1 215 66.0
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 4.1e-71 271.9 214 65.4
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 2.6e-70 269.2 215 66.0
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 4.5e-70 268.5 215 64.7
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 7.7e-70 267.7 214 66.8
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 1.3e-69 266.9 214 65.9
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 5.0e-69 265.0 220 66.8
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 5.0e-69 265.0 218 64.7
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 6.5e-69 264.6 215 63.7
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 3.2e-68 262.3 214 64.5
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 5.5e-68 261.5 216 63.9
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 5.5e-68 261.5 216 63.0
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 7.2e-68 261.2 217 62.7
unitig_26.g9618 Utricularia gibba HOM05D002875 ORTHO05D003215 1.2e-67 260.4 214 64.5
Cpa.g.sc76.34 Carica papaya HOM05D002875 ORTHO05D003215 3.0e-66 255.8 190 68.9
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 5.7e-65 251.5 214 64.5
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 1.7e-64 250.0 188 68.1
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 1.8e-63 246.5 201 64.7
TPR.G17138 Trifolium pratense HOM05D002875 ORTHO05D003215 3.5e-62 242.3 214 69.6
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 3.8e-61 238.8 215 57.2
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 6.8e-58 228.0 215 56.3
QL10p008968 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-57 227.3 214 60.3
Atru.chr9.2505 Acer truncatum HOM05D002875 ORTHO05D003215 2.0e-54 216.5 215 55.8
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 8.0e-51 204.5 230 51.7
QL10p010210 Quercus lobata HOM05D002875 ORTHO05D003215 8.0e-51 204.5 230 51.7
QL10p010250 Quercus lobata HOM05D002875 ORTHO05D003215 3.0e-50 202.6 230 53.0
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 1.5e-44 183.7 232 47.8
Hma1.2p1_0660F.1_g197790 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 5.2e-42 175.3 226 49.6
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 1.5e-41 173.7 141 60.3
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 2.6e-41 172.9 214 45.8
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 4.9e-40 168.7 219 42.9
QL10p009241 Quercus lobata HOM05D002875 ORTHO05D003215 2.7e-38 162.9 232 46.1
QL10p009301 Quercus lobata HOM05D002875 ORTHO05D003215 7.8e-38 161.4 278 40.3
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 3.3e-36 156.0 272 40.4
QL10p009141 Quercus lobata HOM05D002875 ORTHO05D003215 1.5e-33 147.1 272 38.6
QL10p010123 Quercus lobata HOM05D002875 ORTHO05D003215 2.6e-33 146.4 271 38.7
QL10p009349 Quercus lobata HOM05D002875 ORTHO05D003215 5.8e-33 145.2 262 38.9
QL10p009914 Quercus lobata HOM05D002875 ORTHO05D003215 9.8e-33 144.4 267 39.3
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-32 144.1 315 35.9
Hma1.2p1_0149F.1_g066560 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 5.4e-31 138.7 152 48.0
QL10p009338 Quercus lobata HOM05D002875 ORTHO05D003215 7.8e-30 134.8 266 37.2
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 3.3e-28 129.4 231 41.6
Hma1.2p1_0149F.1_g066580 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 4.3e-28 129.0 122 52.5
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 2.1e-27 126.7 225 36.4
CANSAT64G2306 Cannabis sativa HOM05D002875 ORTHO05D003215 6.8e-26 121.7 224 32.6
CiPaw.03G055700 Carya illinoinensis HOM05D002875 ORTHO05D003215 6.8e-26 121.7 224 33.9
SEGI_08382 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 6.8e-26 121.7 221 36.2
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.6e-25 119.8 222 34.7
Mapoly0015s0063 Marchantia polymorpha HOM05D002875 ORTHO05D003215 3.4e-25 119.4 227 34.8
SMO343G0006 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 4.4e-25 119.0 221 34.8
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 7.5e-25 118.2 219 34.7
Nn4g22316 Nelumbo nucifera HOM05D002875 ORTHO05D003215 1.3e-24 117.5 221 34.8
GSVIVG01033091001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.2e-24 116.7 225 35.1
Cpa.g.c44787 Carica papaya HOM05D002875 ORTHO05D003215 8.3e-24 114.8 90 64.4
MBI07_g16948_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 8.3e-24 114.8 226 34.5
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 1.4e-23 114.0 222 34.2
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 1.2e-22 110.9 216 32.9
Duzib187G1197 Durio zibethinus HOM05D002875 ORTHO05D003215 1.2e-22 110.9 224 32.1
Phvul.001G093400 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 1.6e-22 110.5 224 30.8
Dinv25659 Davidia involucrata HOM05D002875 ORTHO05D003215 3.5e-22 109.4 223 34.1
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 4.6e-22 109.0 224 30.8
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 6.0e-22 108.6 224 31.7
Pp3c1_22410 Physcomitrium patens HOM05D002875 ORTHO05D003215 1.0e-21 107.8 231 33.3
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.7e-21 107.1 224 32.6
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.3e-21 106.7 224 31.2
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 2.3e-21 106.7 224 31.2
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 2.3e-21 106.7 224 31.2
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 3.0e-21 106.3 228 30.7
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 3.0e-21 106.3 224 31.7
Atru.chr6.2572 Acer truncatum HOM05D002875 ORTHO05D003215 3.9e-21 105.9 224 29.5
VMungo1383G3279 Vigna mungo HOM05D002875 ORTHO05D003215 3.9e-21 105.9 224 30.8
Lalb_Chr14g0363441 Lupinus albus HOM05D002875 ORTHO05D003215 6.6e-21 105.1 224 33.0
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 6.6e-21 105.1 224 30.8
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 1.1e-20 104.4 216 31.9
Pp3c9_870 Physcomitrium patens HOM05D002875 ORTHO05D003215 1.1e-20 104.4 228 29.4
Cpa.g.sc171.14 Carica papaya HOM05D002875 ORTHO05D003215 1.9e-20 103.6 204 33.3
Glyma.16G056400 Glycine max HOM05D002875 ORTHO05D003215 1.9e-20 103.6 225 32.0
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 1.9e-20 103.6 225 30.7
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 2.5e-20 103.2 224 29.9
vmacro18347 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 9.5e-20 101.3 224 30.8
AagrBONN_evm.TU.Sc2ySwM_228.3556 Anthoceros agrestis HOM05D002875 ORTHO05D003215 1.6e-19 100.5 227 30.4
QL10p010036 Quercus lobata HOM05D002875 ORTHO05D003215 3.6e-19 99.4 154 44.2
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 8.1e-19 98.2 224 31.2
FvH4_6g53530 Fragaria vesca HOM05D002875 ORTHO05D003215 1.8e-18 97.1 224 29.9
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.8e-18 97.1 224 29.9
FAN14G0620 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.8e-18 97.1 224 29.9
arahy.Tifrunner.gnm1.ann1.E3K3GD Arachis hypogaea HOM05D002875 ORTHO05D003215 4.0e-18 95.9 221 27.1
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 5.2e-18 95.5 224 32.6
arahy.Tifrunner.gnm1.ann1.AA3MKH Arachis hypogaea HOM05D002875 ORTHO05D003215 6.8e-18 95.1 221 27.1
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 8.9e-18 94.7 224 28.6
PSO017G7193 Papaver somniferum HOM05D002875 ORTHO05D003215 8.9e-18 94.7 224 29.5
Rhsim08G0042800 Rhododendron simsii HOM05D002875 ORTHO05D003215 1.5e-17 94.0 252 29.0
PSO478G3098 Papaver somniferum HOM05D002875 ORTHO05D003215 2.0e-17 93.6 221 28.1
CSS0013993 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 5.8e-17 92.0 197 33.0
CSS0041276 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.7e-16 90.5 197 33.0
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 3.8e-16 89.4 69 65.2
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 4.9e-16 89.0 69 69.6
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 6.4e-16 88.6 224 29.9
RcHm_v2.0_Chr2g0175571 Rosa chinensis HOM05D002875 ORTHO05D003215 1.4e-15 87.4 219 31.1
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 4.1e-15 85.9 212 28.3
arahy.Tifrunner.gnm1.ann1.2000FW Arachis hypogaea HOM05D002875 ORTHO05D003215 6.2e-11 72.0 164 25.6
DCAR_000969 Daucus carota HOM05D000039 ORTHO05D003215 2.6e-09 66.6 197 28.4
AagrBONN_evm.TU.Sc2ySwM_340.781 Anthoceros agrestis HOM05D002875 ORTHO05D003215 3.5e-06 56.2 73 39.7


User provided reference genes

Program Settings