Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28883 Trifolium pratense HOM05D004145 ORTHO05D004879 1.4e-60 236.1 118 100.0
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 1.3e-58 229.6 117 96.6
Psat0s1551g0280 Pisum sativum HOM05D004145 ORTHO05D004879 4.1e-57 224.6 117 94.0
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 3.0e-55 218.4 119 92.4
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 5.6e-54 214.2 117 92.3
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 1.2e-53 213.0 117 90.6
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 1.6e-53 212.6 117 89.7
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 1.6e-53 212.6 117 89.7
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 2.1e-53 212.2 117 88.9
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 3.1e-52 208.4 117 87.2
Glyma.19G240600 Glycine max HOM05D004145 ORTHO05D004879 1.3e-50 203.0 117 87.2
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 1.3e-50 203.0 117 85.5
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 4.9e-50 201.1 117 84.6
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 3.2e-49 198.4 117 83.8
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 3.2e-49 198.4 117 82.1
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 5.4e-49 197.6 117 82.9
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.6e-48 196.1 117 82.1
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.6e-48 196.1 117 82.1
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.6e-48 196.1 117 82.1
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 1.6e-48 196.1 122 80.3
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 2.7e-48 195.3 117 81.2
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 3.5e-48 194.9 117 81.2
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 4.6e-48 194.5 117 79.5
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 6.0e-48 194.1 117 80.3
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 7.8e-48 193.7 121 81.0
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 7.8e-48 193.7 117 80.3
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 1.3e-47 193.0 123 79.7
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 1.3e-47 193.0 118 82.2
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 1.3e-47 193.0 118 82.2
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 1.3e-47 193.0 118 82.2
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 1.7e-47 192.6 117 80.3
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.7e-47 192.6 117 80.3
Cpa.g.sc117.30 Carica papaya HOM05D004145 ORTHO05D004879 6.6e-47 190.7 117 78.6
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 6.6e-47 190.7 117 78.6
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 1.1e-46 189.9 117 78.6
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 2.5e-46 188.7 123 77.2
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 4.3e-46 188.0 117 76.9
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 5.6e-46 187.6 117 77.8
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 7.3e-46 187.2 117 77.8
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 7.3e-46 187.2 117 76.9
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 1.2e-45 186.4 117 77.8
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 1.6e-45 186.0 118 79.7
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 3.6e-45 184.9 118 78.8
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 3.6e-45 184.9 113 80.5
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 6.2e-45 184.1 113 80.5
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 1.1e-44 183.3 114 78.9
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 1.1e-44 183.3 118 76.3
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 2.3e-44 182.2 123 75.6
Dinv01337 Davidia involucrata HOM05D004145 ORTHO05D004879 2.3e-44 182.2 114 80.7
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 2.3e-44 182.2 114 80.7
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 3.1e-44 181.8 114 78.1
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 3.1e-44 181.8 114 79.8
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 8.9e-44 180.3 108 80.6
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 8.9e-44 180.3 114 78.1
MBI12_g33070_MAGBIO Magnolia biondii HOM05D004145 ORTHO05D004879 1.2e-43 179.9 113 77.0
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.2e-43 179.9 114 77.2
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 1.2e-43 179.9 117 75.2
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 1.2e-43 179.9 112 75.9
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 1.5e-43 179.5 118 76.3
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 1.5e-43 179.5 112 78.6
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 2.0e-43 179.1 112 77.7
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 4.4e-43 177.9 114 77.2
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 4.4e-43 177.9 118 76.3
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 4.4e-43 177.9 113 77.0
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 5.8e-43 177.6 113 77.0
GSVIVG01032341001 Vitis vinifera HOM05D004145 ORTHO05D004879 5.8e-43 177.6 113 77.9
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 1.3e-42 176.4 117 74.4
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 1.7e-42 176.0 113 74.3
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 1.7e-42 176.0 117 76.1
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 8.3e-42 173.7 117 73.5
BcaC02g11578 Brassica carinata HOM05D004145 ORTHO05D004879 8.3e-42 173.7 117 72.6
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 8.3e-42 173.7 117 72.6
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 8.3e-42 173.7 117 72.6
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 8.3e-42 173.7 117 72.6
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 1.1e-41 173.3 117 72.6
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 1.1e-41 173.3 117 70.9
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 1.4e-41 172.9 102 82.4
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 1.9e-41 172.6 113 73.5
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 2.4e-41 172.2 102 80.4
GSVIVG01032295001 Vitis vinifera HOM05D004145 ORTHO05D004879 2.4e-41 172.2 108 76.9
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 3.2e-41 171.8 102 81.4
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 4.1e-41 171.4 117 70.1
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 7.1e-41 170.6 115 76.5
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 7.1e-41 170.6 107 75.7
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 7.1e-41 170.6 113 74.3
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 1.2e-40 169.9 125 72.0
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 1.6e-40 169.5 102 79.4
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 2.1e-40 169.1 113 72.6
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 2.1e-40 169.1 116 73.3
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 2.1e-40 169.1 113 71.7
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 2.1e-40 169.1 117 71.8
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 3.5e-40 168.3 117 71.8
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 6.0e-40 167.5 116 71.6
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 6.0e-40 167.5 113 71.7
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 7.8e-40 167.2 107 73.8
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 2.3e-39 165.6 118 70.3
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 6.6e-39 164.1 117 71.8
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 1.9e-38 162.5 109 71.6
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 4.3e-38 161.4 108 75.0
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.1e-37 159.1 120 67.5
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 3.6e-37 158.3 120 66.7
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 4.7e-37 157.9 118 68.6
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 6.2e-37 157.5 118 68.6
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 3.1e-36 155.2 113 67.3
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 5.2e-36 154.5 134 61.9
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 8.9e-36 153.7 110 69.1
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 8.9e-36 153.7 112 67.9
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 4.4e-35 151.4 115 65.2
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 4.4e-35 151.4 115 63.5
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 1.7e-34 149.4 115 65.2
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 1.1e-33 146.7 108 66.7
TPR.G33351 Trifolium pratense HOM05D004145 ORTHO05D004879 1.9e-33 146.0 74 94.6
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 5.4e-33 144.4 112 67.0
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 7.1e-33 144.1 109 67.0
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.7e-32 142.1 120 65.0
ECA246G4181 Erigeron canadensis HOM05D004145 ORTHO05D004879 7.8e-32 140.6 121 57.9
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 1.7e-31 139.4 105 62.9
Lsat_1_v5_gn_3_33301 Lactuca sativa HOM05D004145 ORTHO05D004879 1.9e-30 136.0 92 71.7
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 2.8e-29 132.1 114 57.9
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 6.2e-29 131.0 91 72.5
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 1.1e-28 130.2 114 57.0
Lj9A674T60 Lonicera japonica HOM05D004145 ORTHO05D004879 1.4e-28 129.8 105 64.8
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 1.2e-27 126.7 114 55.3
AL3G11540 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 2.0e-27 125.9 99 67.7
TPR.G20882 Trifolium pratense HOM05D004145 ORTHO05D004879 2.6e-27 125.6 63 98.4
Haze_00048 Corylus avellana HOM05D000222 ORTHO05D004879 3.2e-25 118.6 72 76.4
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 5.4e-25 117.9 98 59.2
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 3.5e-24 115.2 63 84.1
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 1.3e-23 113.2 63 82.5
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 1.7e-23 112.8 122 53.3
HPP92_016860 Vanilla planifolia HOM05D004145 ORTHO05D004879 1.1e-22 110.2 85 65.9
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.3e-22 108.6 58 86.2
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 5.6e-22 107.8 58 84.5
CBR_g23483 Chara braunii HOM05D004145 ORTHO05D004879 1.1e-20 103.6 151 40.4
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 9.0e-20 100.5 63 71.4
Medtr6g023790 Medicago truncatula HOM05D004145 ORTHO05D004879 1.2e-11 73.6 67 59.7
EL10Ac3g07149 Beta vulgaris HOM05D004145 ORTHO05D004879 1.5e-06 56.6 44 61.4


User provided reference genes

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