Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28880 Trifolium pratense HOM05D000147 ORTHO05D033223 6.9e-44 180.3 91 100.0
Psat1g085760 Pisum sativum HOM05D000147 ORTHO05D007818 5.6e-30 134.0 87 75.9
Medtr6g023875 Medicago truncatula HOM05D000147 ORTHO05D007818 2.1e-24 115.5 91 65.9
Lj2g0016330 Lotus japonicus HOM05D000147 ORTHO05D007818 8.7e-23 110.2 93 62.4
Glyma.05G077900 Glycine max HOM05D000147 ORTHO05D007818 7.4e-22 107.1 88 61.4
Glyma.19G071600 Glycine max HOM05D000147 ORTHO05D007818 9.7e-22 106.7 88 59.1
arahy.Tifrunner.gnm1.ann1.TKGH9F Arachis hypogaea HOM05D000147 ORTHO05D007818 6.3e-21 104.0 90 57.8
arahy.Tifrunner.gnm1.ann1.NFZ2HX Arachis hypogaea HOM05D000147 ORTHO05D007818 1.8e-20 102.4 90 56.7
Phvul.004G063800 Phaseolus vulgaris HOM05D000147 ORTHO05D007818 2.0e-19 99.0 91 58.2
QL02p071567 Quercus lobata HOM05D000147 ORTHO05D007818 2.6e-19 98.6 82 58.5
VMungo0464G2137 Vigna mungo HOM05D000147 ORTHO05D033223 2.6e-19 98.6 89 57.3
Dinv33344 Davidia involucrata HOM05D000147 ORTHO05D007818 3.4e-19 98.2 88 56.8
Lalb_Chr22g0360411 Lupinus albus HOM05D000147 ORTHO05D007818 4.5e-19 97.8 88 55.7
Lj7A608T51 Lonicera japonica HOM05D000147 ORTHO05D007818 5.9e-19 97.4 82 58.5
Oeu011752.1 Olea europaea HOM05D000147 ORTHO05D007818 7.6e-19 97.1 90 55.6
MD09G1011500 Malus domestica HOM05D000147 ORTHO05D007818 1.0e-18 96.7 82 57.3
TAR622G0568 Trochodendron aralioides HOM05D000147 ORTHO05D007818 1.0e-18 96.7 90 52.2
Eucgr.J02336 Eucalyptus grandis HOM05D000147 ORTHO05D007818 1.3e-18 96.3 88 54.5
Sed0024484 Sechium edule HOM05D000147 ORTHO05D007818 1.3e-18 96.3 89 50.6
Rhsim10G0006800 Rhododendron simsii HOM05D000147 ORTHO05D007818 1.7e-18 95.9 90 51.1
AUR62017818 Chenopodium quinoa HOM05D000147 ORTHO05D007818 2.9e-18 95.1 89 51.7
Nn3g16492 Nelumbo nucifera HOM05D000147 ORTHO05D007818 2.9e-18 95.1 84 54.8
Actinidia36198 Actinidia chinensis HOM05D000147 ORTHO05D007818 3.8e-18 94.7 90 54.4
PGR083G1780 Punica granatum HOM05D000147 ORTHO05D007818 3.8e-18 94.7 84 54.8
AUR62003507 Chenopodium quinoa HOM05D000147 ORTHO05D007818 5.0e-18 94.4 89 51.7
CsaV3_2G034150 Cucumis sativus L. HOM05D000147 ORTHO05D007818 5.0e-18 94.4 82 53.7
Manes.15G160100 Manihot esculenta HOM05D000147 ORTHO05D007818 5.0e-18 94.4 82 53.7
Thecc.04G035000 Theobroma cacao HOM05D000147 ORTHO05D007818 1.1e-17 93.2 84 53.6
COL.COLO4_17200 Corchorus olitorius HOM05D000147 ORTHO05D007818 1.9e-17 92.4 88 51.1
Duzib264G0787 Durio zibethinus HOM05D000147 ORTHO05D007818 2.5e-17 92.0 90 53.3
Lsat_1_v5_gn_2_94840 Lactuca sativa HOM05D000147 ORTHO05D007818 2.5e-17 92.0 82 54.9
Haze_14867 Corylus avellana HOM05D000147 ORTHO05D007818 3.2e-17 91.7 89 51.7
MELO3C008195.2 Cucumis melo HOM05D000147 ORTHO05D007818 3.2e-17 91.7 82 51.2
GSVIVG01033101001 Vitis vinifera HOM05D000147 ORTHO05D007818 4.2e-17 91.3 82 53.7
MSTRG.3079 Avicennia marina HOM05D000147 ORTHO05D007818 7.2e-17 90.5 82 56.1
MD17G1012200 Malus domestica HOM05D000147 ORTHO05D007818 9.3e-17 90.1 81 53.1
Hund04336 Selenicereus undatus HOM05D000147 ORTHO05D007818 9.3e-17 90.1 81 55.6
CiPaw.03G054800 Carya illinoinensis HOM05D000147 ORTHO05D007818 1.2e-16 89.7 82 53.7
FAN09G2864 Fragaria x ananassa HOM05D000147 ORTHO05D007818 1.2e-16 89.7 82 54.9
Atru.chr6.2561 Acer truncatum HOM05D000147 ORTHO05D007818 1.6e-16 89.4 82 53.7
PGSC0003DMG400020257 Solanum tuberosum HOM05D000147 ORTHO05D007818 1.6e-16 89.4 90 52.2
CANSAT64G1024 Cannabis sativa HOM05D000147 ORTHO05D007818 2.1e-16 89.0 82 53.7
FvH4_6g53320 Fragaria vesca HOM05D000147 ORTHO05D007818 2.1e-16 89.0 82 53.7
SHI03943 Sapria himalayana HOM05D000147 ORTHO05D007818 2.1e-16 89.0 84 52.4
EL10Ac6g15362 Beta vulgaris HOM05D000147 ORTHO05D007818 2.7e-16 88.6 89 49.4
ClCG11G007070 Citrullus lanatus HOM05D000147 ORTHO05D007818 2.7e-16 88.6 89 48.3
Prupe.3G305500 Prunus persica HOM05D000147 ORTHO05D007818 2.7e-16 88.6 86 48.8
Potri.001G331200 Populus trichocarpa HOM05D000147 ORTHO05D007818 3.6e-16 88.2 82 53.7
Sc09g0006610 Simmondsia chinensis HOM05D000147 ORTHO05D007818 3.6e-16 88.2 90 52.2
Atru.chr6.2553 Acer truncatum HOM05D000147 ORTHO05D007818 4.6e-16 87.8 82 52.4
Cfa007233 Carpinus fangiana HOM05D000147 ORTHO05D007818 4.6e-16 87.8 89 50.6
FAN05G2422 Fragaria x ananassa HOM05D000147 ORTHO05D007818 4.6e-16 87.8 82 53.7
FAN14G4861 Fragaria x ananassa HOM05D000147 ORTHO05D007818 4.6e-16 87.8 82 52.4
AUR62044271 Chenopodium quinoa HOM05D000147 ORTHO05D007818 6.1e-16 87.4 89 49.4
Cc07_g00780 Coffea canephora HOM05D000147 ORTHO05D007818 6.1e-16 87.4 81 54.3
SGA_v2.0_scaffold44G16910 Striga asiatica HOM05D000147 ORTHO05D007818 6.1e-16 87.4 82 53.7
Nitab4.5_0011569g0020 Nicotiana tabacum HOM05D000147 ORTHO05D007818 7.9e-16 87.0 90 50.0
Aqoxy5G03406 Aquilegia oxysepala HOM05D000147 ORTHO05D007818 1.4e-15 86.3 82 50.0
Ciclev10014509m.g Citrus clementina HOM05D000147 ORTHO05D007818 1.4e-15 86.3 82 51.2
CAN.G473.94 Capsicum annuum HOM05D000147 ORTHO05D007818 1.8e-15 85.9 90 50.0
Aa31LG2G5480 Aethionema arabicum HOM05D000614 ORTHO05D007818 2.3e-15 85.5 89 50.6
FAN02G3884 Fragaria x ananassa HOM05D000147 ORTHO05D007818 2.3e-15 85.5 81 54.3
Hma1.2p1_0279F.1_g112680 Hydrangea macrophylla HOM05D000147 ORTHO05D007818 2.3e-15 85.5 91 52.7
Hma1.2p1_0279F.1_g112690 Hydrangea macrophylla HOM05D000147 ORTHO05D007818 2.3e-15 85.5 91 52.7
SalBow4G0651 Salvia bowleyana HOM05D000147 ORTHO05D007818 3.9e-15 84.7 82 51.2
Sopen02g038720 Solanum pennellii HOM05D000147 ORTHO05D007818 5.1e-15 84.3 90 50.0
ATR0561G019 Amborella trichopoda HOM05D000147 ORTHO05D007818 6.7e-15 84.0 87 50.6
Migut.F00070 Erythranthe guttata HOM05D000147 ORTHO05D007818 6.7e-15 84.0 82 50.0
Solyc02g094100.4 Solanum lycopersicum HOM05D000147 ORTHO05D007818 1.1e-14 83.2 90 48.9
unitig_699.g19735 Utricularia gibba HOM05D000147 ORTHO05D007818 1.5e-14 82.8 89 47.2
CARHR148340 Cardamine hirsuta HOM05D000147 ORTHO05D007818 1.9e-14 82.4 89 48.3
MBI07_g34625_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D007818 1.9e-14 82.4 84 50.0
BcaB07g30187 Brassica carinata HOM05D000147 ORTHO05D007818 2.5e-14 82.0 87 47.1
Peaxi162Scf00420g00544 Petunia axillaris HOM05D000147 ORTHO05D007818 2.5e-14 82.0 90 50.0
Peaxi162Scf00692g00520 Petunia axillaris HOM05D000147 ORTHO05D007818 2.5e-14 82.0 90 50.0
Ah.04g158420 Amaranthus hybridus HOM05D000147 ORTHO05D007818 3.3e-14 81.6 89 46.1
AT3G27120 Arabidopsis thaliana HOM05D000147 ORTHO05D007818 3.3e-14 81.6 89 48.3
A02p35120 Brassica napus HOM05D000147 ORTHO05D033223 3.3e-14 81.6 88 50.0
AL5G16250 Arabidopsis lyrata HOM05D000147 ORTHO05D007818 5.7e-14 80.9 89 48.3
BcaC03g17425 Brassica carinata HOM05D000147 ORTHO05D007818 5.7e-14 80.9 87 49.4
C02p53750 Brassica napus HOM05D000147 ORTHO05D007818 5.7e-14 80.9 87 49.4
Carub.0005s0537 Capsella rubella HOM05D000147 ORTHO05D007818 5.7e-14 80.9 82 50.0
RcHm_v2.0_Chr2g0175481 Rosa chinensis HOM05D000147 ORTHO05D007818 9.7e-14 80.1 82 50.0
Cpa.g.sc171.22 Carica papaya HOM05D000147 ORTHO05D007818 1.3e-13 79.7 82 48.8
ECA238G3602 Erigeron canadensis HOM05D000147 ORTHO05D007818 1.7e-13 79.3 82 50.0
Gohir.A09G040880 Gossypium hirsutum HOM05D000147 ORTHO05D007818 2.2e-13 79.0 88 46.6
Gohir.D09G036500 Gossypium hirsutum HOM05D000147 ORTHO05D007818 2.2e-13 79.0 88 46.6
Gorai.006G041500 Gossypium raimondii HOM05D000147 ORTHO05D007818 2.2e-13 79.0 88 46.6
THA.LOC104805328 Tarenaya hassleriana HOM05D000147 ORTHO05D007818 2.2e-13 79.0 89 48.3
DCAR_000964 Daucus carota HOM05D000147 ORTHO05D007818 2.8e-13 78.6 89 51.7
TWI36G0450 Tripterygium wilfordii HOM05D000147 ORTHO05D007818 2.8e-13 78.6 90 47.8
Sp2g16250 Schrenkiella parvula HOM05D000147 ORTHO05D007818 1.8e-12 75.9 90 45.6
Thhalv10003791m.g Eutrema salsugineum HOM05D000147 ORTHO05D007818 6.9e-12 73.9 84 46.4
Peaxi162Scf00166g00819 Petunia axillaris HOM05D000147 ORTHO05D007818 1.2e-11 73.2 73 53.4
vmacro05953 Vaccinium macrocarpon HOM05D000147 ORTHO05D007818 2.0e-11 72.4 61 55.7
EL10Ac1g00071 Beta vulgaris HOM05D010647 ORTHO05D012576 7.7e-11 70.5 84 44.0
HanXRQChr07g0198241 Helianthus annuus HOM05D000147 ORTHO05D007818 2.9e-10 68.6 79 48.1
SEGI_09594 Sequoiadendron giganteum HOM05D000147 ORTHO05D007818 1.1e-09 66.6 82 45.1
Zm00001eb133210 Zea mays HOM05D000147 ORTHO05D007818 1.1e-06 56.6 85 41.2


User provided reference genes

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