Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.3e-96 355.5 177 100.0
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.9e-82 309.3 177 83.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.5e-82 307.8 177 82.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.8e-73 278.9 175 75.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 8.0e-73 277.3 178 78.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.5e-71 273.1 177 73.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.3e-70 270.0 178 75.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-66 256.1 177 70.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.6e-65 251.9 174 70.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-64 250.0 174 67.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.3e-64 249.2 174 67.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-62 243.4 170 67.1
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.3e-62 243.4 172 67.4
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-62 243.4 170 68.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.7e-62 243.0 170 67.1
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.2e-62 242.7 170 66.5
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.2e-62 242.7 173 67.6
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.9e-62 241.5 170 67.6
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.4e-62 241.1 173 65.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 8.3e-62 240.7 173 65.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.2e-61 238.8 170 67.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.2e-61 238.8 170 65.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.2e-61 238.8 173 67.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 4.1e-61 238.4 170 65.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 5.4e-61 238.0 172 66.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 7.1e-61 237.7 172 65.7
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 7.1e-61 237.7 170 65.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 9.2e-61 237.3 170 67.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-60 236.9 170 66.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.2e-60 236.9 170 67.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.6e-60 236.5 170 65.9
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.6e-60 236.5 172 65.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-60 236.5 172 65.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.1e-60 236.1 170 65.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.1e-60 236.1 172 64.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.1e-60 236.1 173 65.9
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.7e-60 235.7 170 65.3
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.7e-60 235.7 172 66.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.5e-60 235.3 170 65.9
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.6e-60 235.0 165 67.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.6e-60 235.0 170 66.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 7.8e-60 234.2 160 68.8
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 7.8e-60 234.2 173 64.2
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 7.8e-60 234.2 167 65.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.7e-59 233.0 169 66.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.7e-59 233.0 170 64.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.3e-59 232.6 170 64.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.3e-59 232.6 170 65.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.3e-59 232.6 171 65.5
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.0e-59 232.3 169 64.5
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.0e-59 232.3 170 66.5
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 3.9e-59 231.9 169 64.5
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.9e-59 231.9 173 64.7
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 5.1e-59 231.5 173 65.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.6e-59 231.1 170 64.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-58 230.3 169 63.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-58 230.3 171 64.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.5e-58 229.9 174 64.4
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.9e-58 229.6 173 64.2
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.9e-58 229.6 173 63.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.9e-58 229.6 173 64.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.9e-58 229.6 158 67.7
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.5e-58 229.2 169 63.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.5e-58 229.2 168 64.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.3e-58 228.8 159 69.8
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.3e-58 228.8 173 64.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 4.3e-58 228.4 169 63.3
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.3e-58 228.4 170 64.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.6e-58 228.0 169 62.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.6e-58 228.0 173 64.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 5.6e-58 228.0 173 64.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 7.3e-58 227.6 169 63.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.3e-58 227.6 170 64.1
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.3e-58 227.6 170 64.1
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.3e-58 227.6 161 67.7
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 7.3e-58 227.6 173 63.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.5e-58 227.3 173 64.7
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.6e-57 226.5 159 67.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.1e-57 226.1 169 62.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.1e-57 226.1 169 62.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.1e-57 226.1 173 63.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.8e-57 225.7 171 61.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.8e-57 225.7 169 62.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.8e-57 225.7 169 62.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.8e-57 225.7 170 61.8
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.8e-57 225.7 170 62.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.7e-57 224.9 160 64.4
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 4.7e-57 224.9 174 62.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.7e-57 224.9 173 62.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 8.1e-57 224.2 175 61.7
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.1e-56 223.8 175 63.4
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-56 223.8 173 61.3
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.4e-56 223.4 170 62.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.8e-56 223.0 173 62.4
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.3e-56 222.6 173 62.4
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.2e-56 221.5 174 62.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 8.9e-56 220.7 173 61.8
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.0e-55 219.5 172 61.0
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.6e-55 219.2 171 63.7
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.4e-55 218.4 171 60.2
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.9e-54 215.7 174 60.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.9e-54 215.7 164 61.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-53 213.4 163 62.0
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.4e-53 212.6 170 59.4
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.1e-53 211.8 163 62.6
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.1e-53 211.1 163 63.2
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-52 210.3 163 61.3
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.2e-52 210.3 168 60.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.6e-52 209.9 163 62.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.1e-52 209.5 172 60.5
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-52 208.8 173 57.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.6e-52 208.4 158 60.8
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-51 207.2 163 62.0
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-51 207.2 163 62.0
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.3e-51 206.8 170 55.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.7e-51 206.5 163 60.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.7e-51 206.5 162 61.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.0e-51 205.7 169 58.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.0e-51 205.7 170 56.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 3.9e-51 205.3 170 59.4
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-50 203.0 162 61.1
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 4.3e-50 201.8 160 58.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.2e-49 200.3 162 58.0
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.6e-49 199.9 162 58.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.6e-49 198.7 163 57.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.7e-49 198.4 173 57.2
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.5e-47 193.4 162 55.6
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.0e-47 193.0 163 57.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.8e-47 191.4 166 56.0
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 7.6e-47 191.0 163 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 6.4e-46 188.0 157 54.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 6.4e-46 188.0 132 63.6
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.4e-46 188.0 163 56.4
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.4e-45 186.0 131 64.1
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.1e-45 184.5 157 54.8
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 9.3e-45 184.1 163 53.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.3e-43 180.3 157 51.0
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.3e-43 179.5 173 53.2
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.6e-43 177.9 160 55.6
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.6e-43 177.9 142 62.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 5.6e-42 174.9 160 55.0
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.6e-42 174.9 160 55.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 9.6e-42 174.1 159 50.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.6e-41 173.3 159 54.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.6e-41 173.3 157 49.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-41 172.9 160 54.4
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.1e-41 172.9 165 55.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.1e-40 170.6 164 53.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-39 165.2 174 50.6
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.4e-39 165.2 138 60.1
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-38 163.7 171 50.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.8e-38 162.2 172 50.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 6.4e-38 161.4 142 53.5
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.1e-37 160.6 176 49.4
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 4.2e-37 158.7 95 78.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.4e-37 158.3 118 65.3
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.5e-36 155.6 131 61.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.0e-36 154.8 134 59.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-35 154.1 176 50.0
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.0e-35 154.1 159 51.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.3e-35 152.9 176 49.4
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.0e-35 152.5 144 55.6
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.1e-32 142.5 125 54.4
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.9e-30 136.0 148 44.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.6e-28 128.6 116 56.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.8e-27 126.7 174 43.1
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.6e-26 120.9 91 60.4
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.2e-25 118.2 92 58.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.4e-24 117.1 96 58.3
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.1e-24 115.9 90 61.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.3e-18 95.5 73 56.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.3e-13 77.8 84 48.8
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.3e-11 73.2 81 53.1
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-09 66.2 51 58.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.7e-09 65.9 174 27.6
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.2e-09 64.7 53 58.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.1e-08 64.3 106 36.8
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-08 63.9 177 25.4
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 5.9e-07 58.5 33 72.7
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.7e-07 58.2 33 69.7


User provided reference genes

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