Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28775 Trifolium pratense HOM05D003657 ORTHO05D004286 5.7e-49 197.2 96 100.0
Ca_30683_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 3.9e-21 104.8 61 85.2
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 6.6e-21 104.0 61 83.6
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 1.9e-20 102.4 61 83.6
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 4.3e-20 101.3 61 82.0
Psat5g159760 Pisum sativum HOM05D003657 ORTHO05D004286 5.2e-18 94.4 61 78.7
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 2.0e-17 92.4 62 74.2
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 1.3e-16 89.7 64 70.3
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 1.7e-16 89.4 64 73.4
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 8.3e-16 87.0 64 71.9
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 1.4e-15 86.3 64 70.3
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 1.9e-15 85.9 64 70.3
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 4.1e-15 84.7 65 64.6
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 2.1e-14 82.4 61 67.2
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 3.5e-14 81.6 65 63.1
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 2.3e-13 79.0 66 65.2
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 2.3e-13 79.0 63 63.5
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 3.0e-13 78.6 60 66.7
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 1.1e-12 76.6 66 65.2
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 1.9e-12 75.9 66 62.1
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 1.9e-12 75.9 66 63.6
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.5e-12 75.5 61 65.6
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.5e-12 75.5 61 65.6
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.5e-12 75.5 61 65.6
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 2.5e-12 75.5 66 62.1
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 2.5e-12 75.5 62 64.5
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 3.3e-12 75.1 66 62.1
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 3.3e-12 75.1 66 62.1
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 3.3e-12 75.1 60 66.7
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 5.6e-12 74.3 61 63.9
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 5.6e-12 74.3 65 61.5
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 5.6e-12 74.3 65 60.0
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 7.3e-12 73.9 66 63.6
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 9.6e-12 73.6 65 63.1
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 9.6e-12 73.6 62 62.9
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 9.6e-12 73.6 53 66.0
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 9.6e-12 73.6 65 60.0
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 9.6e-12 73.6 65 60.0
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 9.6e-12 73.6 65 60.0
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 9.6e-12 73.6 66 63.6
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 9.6e-12 73.6 65 61.5
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 1.2e-11 73.2 69 60.9
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 1.6e-11 72.8 64 60.9
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 1.6e-11 72.8 66 62.1
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 2.1e-11 72.4 66 60.6
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 2.8e-11 72.0 66 62.1
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 2.8e-11 72.0 62 62.9
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 2.8e-11 72.0 66 63.6
RcHm_v2.0_Chr2g0157131 Rosa chinensis HOM05D003657 ORTHO05D004286 2.8e-11 72.0 65 60.0
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 2.8e-11 72.0 66 60.6
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 3.6e-11 71.6 61 63.9
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 3.6e-11 71.6 65 56.9
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 3.6e-11 71.6 67 59.7
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 3.6e-11 71.6 61 63.9
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 4.7e-11 71.2 67 59.7
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 4.7e-11 71.2 67 56.7
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 4.7e-11 71.2 67 56.7
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 6.2e-11 70.9 59 62.7
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 8.1e-11 70.5 55 69.1
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 8.1e-11 70.5 55 69.1
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 8.1e-11 70.5 67 56.7
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 8.1e-11 70.5 62 61.3
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 8.1e-11 70.5 71 56.3
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 8.1e-11 70.5 66 60.6
Lj4A394T19 Lonicera japonica HOM05D003657 ORTHO05D004286 1.1e-10 70.1 70 55.7
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 1.1e-10 70.1 66 57.6
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 1.4e-10 69.7 61 63.9
QL08p039443 Quercus lobata HOM05D003657 ORTHO05D004286 1.4e-10 69.7 60 65.0
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 1.8e-10 69.3 65 58.5
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 1.8e-10 69.3 59 62.7
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 2.4e-10 68.9 65 60.0
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 2.4e-10 68.9 65 60.0
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 2.4e-10 68.9 66 60.6
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 2.4e-10 68.9 66 57.6
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 2.4e-10 68.9 66 60.6
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 3.1e-10 68.6 66 59.1
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 3.1e-10 68.6 68 58.8
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 4.0e-10 68.2 60 65.0
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 4.0e-10 68.2 55 65.5
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 5.2e-10 67.8 66 57.6
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 5.2e-10 67.8 66 57.6
Lj4C400T2 Lonicera japonica HOM05D003657 ORTHO05D004286 5.2e-10 67.8 70 54.3
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 5.2e-10 67.8 66 59.1
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 5.2e-10 67.8 66 59.1
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 5.2e-10 67.8 60 56.7
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 5.2e-10 67.8 62 58.1
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 6.8e-10 67.4 65 56.9
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 6.8e-10 67.4 65 56.9
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 6.8e-10 67.4 65 58.5
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 8.9e-10 67.0 66 56.1
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 8.9e-10 67.0 65 58.5
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 8.9e-10 67.0 65 58.5
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 8.9e-10 67.0 65 58.5
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 8.9e-10 67.0 64 56.2
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 1.2e-09 66.6 65 58.5
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 1.2e-09 66.6 61 59.0
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 1.2e-09 66.6 66 57.6
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 1.5e-09 66.2 64 56.2
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 2.0e-09 65.9 59 59.3
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 2.0e-09 65.9 61 57.4
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 2.6e-09 65.5 65 56.9
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.6e-09 65.5 59 61.0
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 2.6e-09 65.5 54 61.1
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 2.6e-09 65.5 54 59.3
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 2.6e-09 65.5 61 57.4
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 3.4e-09 65.1 67 55.2
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.4e-09 65.1 60 61.7
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 4.4e-09 64.7 65 56.9
Lj2A1080T42 Lonicera japonica HOM05D003657 ORTHO05D004286 7.6e-09 63.9 66 56.1
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 7.6e-09 63.9 61 55.7
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 9.9e-09 63.5 68 57.4
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 9.9e-09 63.5 66 57.6
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 9.9e-09 63.5 60 60.0
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 1.3e-08 63.2 63 55.6
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.7e-08 62.8 66 51.5
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 1.7e-08 62.8 59 55.9
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 2.2e-08 62.4 65 52.3
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 2.2e-08 62.4 55 63.6
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 2.2e-08 62.4 55 63.6
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 2.2e-08 62.4 55 63.6
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 2.2e-08 62.4 55 63.6
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 2.9e-08 62.0 54 59.3
BolC5t29306H Brassica oleracea HOM05D003657 ORTHO05D004286 2.9e-08 62.0 54 59.3
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 2.9e-08 62.0 59 59.3
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 3.8e-08 61.6 75 50.7
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.8e-08 61.6 55 63.6
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 3.8e-08 61.6 67 53.7
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 6.4e-08 60.8 62 51.6
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 6.4e-08 60.8 64 56.2
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 8.4e-08 60.5 55 56.4
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 2.4e-07 58.9 65 50.8
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 2.1e-06 55.8 35 80.0
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 3.5e-06 55.1 35 74.3
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 3.5e-06 55.1 60 50.0


User provided reference genes

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