Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 2942.5 1530 100.0
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 2222.6 1572 78.2
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 2192.9 1575 76.8
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1922.9 1553 70.9
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1870.1 1576 69.0
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1741.1 1576 65.6
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1736.1 1552 66.4
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1580.8 1545 61.6
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 1549.6 1598 59.4
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1529.6 1606 58.9
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 1520.8 1602 58.9
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 1459.1 1590 56.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1441.4 1612 56.9
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 0.0e+00 1436.4 1605 56.3
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 0.0e+00 1401.3 1645 54.6
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1370.5 1582 55.6
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 1337.8 1643 53.0
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1088.2 1670 46.3
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 5.1e-309 1065.1 1625 45.7
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 8.5e-304 1047.7 1605 46.3
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 9.7e-300 1034.2 1696 43.0
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 2.6e-297 1026.2 1635 44.1
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 5.0e-296 1021.9 1604 46.1
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 1.1e-290 1004.2 1696 43.0
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.2e-288 996.5 1626 45.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 4.0e-285 985.7 1616 44.9
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 5.2e-285 985.3 1621 45.0
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 5.7e-284 981.9 1616 45.1
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.6e-281 973.8 1613 44.7
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 4.5e-281 972.2 1559 44.7
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 8.5e-280 968.0 1590 44.0
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.0e-276 956.8 1628 43.3
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.8e-275 953.0 1620 44.2
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 7.0e-274 948.3 1594 43.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.4e-269 934.1 1607 41.9
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 9.8e-268 927.9 1580 43.0
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 2.7e-265 919.8 1626 43.9
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.6e-264 914.8 1628 43.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 5.2e-261 905.6 1577 42.5
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 7.8e-257 891.7 1609 41.6
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.5e-255 884.8 1613 41.8
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.8e-254 883.2 1607 42.3
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.9e-248 862.8 1615 41.1
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-247 860.9 1611 41.0
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 4.3e-247 859.4 1665 40.2
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 6.2e-246 855.5 1661 40.2
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 2.3e-245 853.6 1630 40.9
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.4e-244 849.4 1605 41.2
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.7e-243 846.3 1608 40.7
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.7e-241 840.1 1601 40.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 9.9e-236 821.6 1598 40.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.7e-235 820.8 1629 40.4
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 7.1e-234 815.5 1586 40.9
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.3e-224 783.9 1513 41.0
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.6e-224 782.3 1646 39.2
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 8.7e-224 781.9 1588 40.6
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.2e-220 771.5 1581 40.3
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 3.8e-219 766.5 1597 39.8
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 6.0e-217 759.2 1421 41.4
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 7.9e-217 758.8 768 57.7
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.0e-216 756.9 1598 39.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.5e-215 754.6 1569 40.0
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 7.4e-215 752.3 1596 39.3
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.1e-214 750.7 1603 38.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.1e-213 748.4 1626 38.6
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 6.9e-213 745.7 1597 38.9
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.3e-208 730.7 1631 37.6
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 4.3e-207 726.5 1619 38.9
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 2.7e-201 707.2 1568 37.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.3e-199 699.9 1578 37.3
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.4e-197 694.1 1358 39.8
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.0e-196 691.0 1601 38.5
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 7.7e-196 689.1 1615 36.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.0e-195 688.7 1301 40.7
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 7.2e-194 682.6 1625 37.8
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 3.0e-192 677.2 1681 36.1
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 7.4e-191 672.5 1626 37.7
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 6.9e-189 666.0 1659 36.4
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 2.5e-186 657.5 1567 37.0
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.7e-185 654.1 1576 36.6
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 2.9e-179 634.0 1605 35.6
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.5e-178 630.9 1604 35.7
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.2e-178 630.6 1624 36.5
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.6e-177 628.2 1624 36.5
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.1e-175 622.1 1576 36.3
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 2.6e-167 594.3 1628 36.1
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 7.0e-165 586.3 1558 35.1
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.6e-164 585.1 1584 35.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.0e-163 582.4 1624 34.7
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.0e-163 582.4 1759 34.6
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.0e-163 580.1 1165 39.2
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 2.8e-158 564.3 1581 35.0
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.4e-157 560.1 1574 34.5
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 2.7e-156 557.8 1561 34.8
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 8.6e-155 552.7 1560 34.4
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 4.7e-153 547.0 1578 35.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 6.1e-153 546.6 1579 35.0
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 8.0e-153 546.2 1313 37.1
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.4e-151 540.4 1684 33.7
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 6.3e-150 536.6 1642 33.4
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 6.3e-150 536.6 1579 34.8
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.8e-149 535.0 1696 33.5
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.4e-149 534.6 1578 34.7
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 9.2e-149 532.7 1587 34.3
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 3.5e-148 530.8 1631 33.5
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.6e-147 526.6 1601 33.2
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 3.6e-137 494.2 1567 32.7
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.1e-133 482.6 1352 33.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 4.6e-132 477.2 1488 33.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.5e-130 471.5 1557 32.2
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.7e-126 458.8 693 45.5
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 7.1e-125 453.4 1557 31.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 2.7e-124 451.4 1564 32.2
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 3.0e-123 448.0 1565 31.9
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.5e-122 445.7 1187 36.3
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 4.3e-122 444.1 1688 32.6
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.8e-119 433.7 930 37.2
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.2e-117 427.9 1528 31.4
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.6e-116 425.6 1579 33.2
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.5e-114 419.1 1526 31.1
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 5.1e-107 394.0 1572 30.6
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.4e-101 375.9 1560 29.6
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-98 366.3 342 62.6
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.8e-91 342.4 1521 30.0
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.7e-78 299.3 1624 28.0
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 4.2e-69 268.1 1546 28.2
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.3e-65 256.5 194 74.7
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.8e-65 255.4 1389 26.1
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-63 249.6 702 34.3
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 3.5e-63 248.4 229 65.1
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.9e-61 242.7 799 32.7
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.7e-60 238.0 208 67.8
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 6.1e-60 237.7 217 65.9
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.4e-58 231.5 1547 26.7
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 2.2e-57 229.2 194 69.6
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 9.1e-56 223.8 217 63.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.9e-53 216.1 1675 25.7
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 5.5e-53 214.5 208 59.1
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.7e-52 211.5 1544 26.4
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 6.1e-52 211.1 1589 27.1
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.0e-48 197.6 473 35.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.6e-47 196.4 486 34.6
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.0e-43 182.2 210 57.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.0e-35 155.2 1276 25.9
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.6e-31 141.7 358 34.9
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.6e-28 133.3 89 76.4
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.1e-27 129.0 1454 24.7
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.9e-24 119.8 472 32.0
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 2.6e-18 99.4 1602 24.2
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 2.9e-17 95.9 75 73.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.7e-17 95.5 243 39.1
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 5.4e-16 91.7 506 28.1
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.2e-15 90.5 135 44.4
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.6e-13 81.6 1336 25.4
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-12 80.1 182 38.5
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.8e-10 71.6 142 44.4
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.1e-08 64.7 262 32.4
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.0e-06 59.3 1455 22.3
Psat7g104280 Pisum sativum HOM05D001630 ORTHO05D002505 8.6e-06 57.8 164 38.4


User provided reference genes

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