Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.5e-105 386.3 216 100.0
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 2.7e-83 312.4 211 82.5
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 1.5e-73 280.0 218 77.5
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 1.3e-72 276.9 212 73.6
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 1.7e-61 240.0 212 67.0
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 1.4e-58 230.3 212 66.5
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 2.3e-58 229.6 211 55.5
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 8.3e-56 221.1 213 63.8
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.9e-55 219.9 213 63.4
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.0e-53 214.2 244 56.1
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 6.6e-53 211.5 214 62.1
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 5.2e-50 201.8 230 58.7
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.3e-32 144.1 217 43.8
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 3.5e-30 136.0 214 43.9
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.0e-29 134.4 222 43.2
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 1.5e-28 130.6 226 43.8
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 9.6e-28 127.9 222 43.7
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 2.1e-27 126.7 197 47.2
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 2.4e-26 123.2 220 42.7
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 1.2e-25 120.9 220 40.0
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 3.4e-25 119.4 217 41.5
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.8e-25 118.6 188 43.1
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 7.6e-25 118.2 170 49.4
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 1.3e-24 117.5 161 48.4
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 3.8e-24 115.9 200 37.5
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 4.9e-24 115.5 161 47.8
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 1.9e-23 113.6 148 41.2
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 1.9e-23 113.6 148 41.2
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 3.2e-23 112.8 194 36.1
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 4.2e-23 112.5 188 41.5
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 7.1e-23 111.7 207 40.1
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.2e-22 110.9 193 36.3
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 1.6e-22 110.5 222 41.0
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.1e-22 110.2 181 40.3
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 4.6e-22 109.0 212 36.3
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.0e-21 107.8 150 46.7
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.3e-21 106.7 147 52.4
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 3.0e-21 106.3 192 38.0
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 3.0e-21 106.3 230 38.7
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 5.1e-21 105.5 148 37.2
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 5.1e-21 105.5 156 41.0
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 6.7e-21 105.1 144 52.8
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 8.7e-21 104.8 178 39.3
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 1.5e-20 104.0 192 37.0
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.5e-20 103.2 188 38.8
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 3.3e-20 102.8 193 38.9
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 3.3e-20 102.8 120 58.3
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 4.3e-20 102.4 178 38.8
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 5.6e-20 102.1 157 48.4
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 9.6e-20 101.3 148 48.0
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.3e-19 100.9 136 53.7
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.3e-19 100.9 131 52.7
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 2.1e-19 100.1 151 49.0
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 2.8e-19 99.8 137 48.2
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 6.2e-19 98.6 126 54.0
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 8.1e-19 98.2 203 42.9
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.1e-18 97.8 135 48.9
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 1.1e-18 97.8 186 38.7
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 1.4e-18 97.4 208 38.5
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 1.4e-18 97.4 140 50.0
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 2.4e-18 96.7 126 51.6
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 2.4e-18 96.7 208 33.7
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.4e-18 96.7 160 35.6
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 3.1e-18 96.3 126 50.8
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 5.3e-18 95.5 210 40.5
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 9.0e-18 94.7 173 41.6
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 2.6e-17 93.2 138 50.7
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 1.0e-16 91.3 156 46.2
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.9e-16 89.7 127 48.8
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 4.2e-15 85.9 143 45.5
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 5.5e-15 85.5 104 51.9
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 1.2e-14 84.3 123 35.8
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 1.6e-14 84.0 132 34.1
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 4.6e-14 82.4 165 32.7
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 6.0e-14 82.0 111 53.2
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.3e-13 80.9 170 43.5
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 2.3e-13 80.1 195 32.3
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 3.0e-13 79.7 171 40.4
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 3.9e-13 79.3 104 47.1
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 1.1e-12 77.8 143 39.9
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 2.5e-12 76.6 195 34.4
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 2.5e-12 76.6 149 38.3
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 4.3e-12 75.9 116 50.9
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 7.4e-12 75.1 196 32.7
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 7.4e-12 75.1 196 32.7
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 9.6e-12 74.7 121 49.6
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 1.6e-11 73.9 122 47.5
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.1e-11 73.6 157 40.8
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 2.8e-11 73.2 141 43.3
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 3.7e-11 72.8 140 34.3
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 4.8e-11 72.4 221 34.8
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 6.3e-11 72.0 121 37.2
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 8.2e-11 71.6 121 46.3
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 2.4e-10 70.1 118 45.8
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 4.1e-10 69.3 187 36.9
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 5.3e-10 68.9 112 46.4
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 9.0e-10 68.2 120 35.8
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.6e-09 66.6 127 44.9
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 3.4e-09 66.2 134 43.3
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.4e-09 66.2 134 35.1
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 5.9e-09 65.5 122 44.3
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 7.6e-09 65.1 106 54.7
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 7.6e-09 65.1 66 53.0
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.6e-09 65.1 111 45.0
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.6e-09 65.1 111 45.0
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 7.6e-09 65.1 134 37.3
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.3e-08 64.3 146 38.4
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.3e-08 64.3 146 39.0
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 1.3e-08 64.3 121 46.3
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 1.7e-08 63.9 143 35.7
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 2.2e-08 63.5 91 52.7
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 2.9e-08 63.2 144 32.6
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 3.8e-08 62.8 137 39.4
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 5.0e-08 62.4 172 30.8
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 5.0e-08 62.4 140 36.4
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 6.5e-08 62.0 129 38.0
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 8.5e-08 61.6 111 45.0
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 8.5e-08 61.6 160 36.9
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.1e-07 61.2 114 48.2
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.1e-07 61.2 112 41.1
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.4e-07 60.8 131 38.2
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.4e-07 60.8 139 25.9
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.9e-07 60.5 107 43.9
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.9e-07 60.5 120 40.0
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.9e-07 60.5 122 41.0
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 2.5e-07 60.1 113 30.1
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 2.5e-07 60.1 113 30.1
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 2.5e-07 60.1 138 33.3
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 4.2e-07 59.3 117 41.9
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 5.5e-07 58.9 177 28.2
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 5.5e-07 58.9 165 36.4
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 5.5e-07 58.9 115 40.0
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 7.2e-07 58.5 106 46.2
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 9.3e-07 58.2 161 31.1
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 1.2e-06 57.8 157 37.6
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.2e-06 57.8 130 40.0
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.6e-06 57.4 184 34.8
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.6e-06 57.4 119 39.5
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.1e-06 57.0 133 38.3
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 3.6e-06 56.2 141 35.5
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 4.6e-06 55.8 101 48.5
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 6.1e-06 55.5 99 47.5
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 7.9e-06 55.1 140 26.4
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 7.9e-06 55.1 160 34.4


User provided reference genes

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