Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1230.3 604 100.0
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1127.9 600 91.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1122.5 600 91.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1099.7 600 89.2
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 4.5e-309 1063.9 600 84.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 1.8e-302 1042.0 600 83.0
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 4.1e-302 1040.8 600 83.7
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 7.0e-302 1040.0 600 83.3
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 4.0e-297 1024.2 600 82.3
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 1.7e-295 1018.8 600 80.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 2.2e-295 1018.5 600 81.2
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 1.3e-279 966.1 601 75.9
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.4e-278 962.6 587 78.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 2.3e-276 955.3 599 75.6
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 5.0e-276 954.1 599 75.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 8.6e-276 953.4 601 75.7
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 1.8e-273 945.7 601 74.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-271 938.7 600 73.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 3.7e-271 937.9 603 74.5
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.3e-271 936.8 601 74.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 2.4e-270 935.3 601 74.2
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 1.2e-269 932.9 601 73.5
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 1.6e-269 932.6 601 74.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 6.0e-269 930.6 601 75.2
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 6.0e-269 930.6 601 73.9
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.0e-268 929.9 599 74.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 1.0e-268 929.9 601 73.2
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.6e-268 927.2 599 74.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.6e-268 927.2 599 74.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 9.5e-267 923.3 601 74.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 1.6e-266 922.5 601 72.7
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 6.2e-266 920.6 601 73.2
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 8.1e-266 920.2 601 72.0
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 8.1e-266 920.2 601 72.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.3e-265 918.7 599 74.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 3.1e-265 918.3 601 73.4
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 6.8e-265 917.1 601 74.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 3.2e-262 908.3 601 71.9
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 7.1e-262 907.1 601 71.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.6e-261 906.0 601 72.5
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 6.0e-261 904.0 602 72.4
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.3e-260 902.9 602 72.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.3e-260 902.1 601 72.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.3e-259 897.9 601 71.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 5.6e-259 897.5 601 71.4
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 1.8e-257 892.5 601 70.2
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 3.1e-257 891.7 599 70.6
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 6.8e-257 890.6 620 69.7
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 1.5e-256 889.4 600 70.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 1.7e-255 885.9 602 70.6
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 2.9e-255 885.2 597 70.7
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 6.4e-255 884.0 601 71.2
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 2.4e-254 882.1 600 70.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.3e-252 876.3 603 70.0
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 3.9e-252 874.8 601 68.6
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 5.1e-252 874.4 601 68.6
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 9.6e-251 870.2 592 69.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 1.6e-250 869.4 600 68.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.1e-250 869.0 600 68.7
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 2.1e-250 869.0 659 64.5
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 6.2e-250 867.5 619 67.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 2.0e-248 862.4 600 68.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 2.6e-248 862.1 600 68.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 9.9e-248 860.1 600 68.8
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 2.2e-247 859.0 600 68.5
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 7.1e-246 854.0 600 67.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 1.2e-245 853.2 603 69.0
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 2.1e-245 852.4 600 67.5
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 2.1e-245 852.4 601 68.9
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 7.8e-245 850.5 600 68.3
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 8.7e-244 847.0 600 66.5
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 8.7e-244 847.0 600 67.3
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 8.7e-244 847.0 586 67.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 3.6e-242 841.6 604 66.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.2e-240 836.6 600 66.2
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 1.5e-240 836.3 600 66.2
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.5e-240 836.3 600 67.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 3.2e-238 828.6 601 68.1
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 4.2e-238 828.2 601 66.7
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 1.6e-237 826.2 600 65.2
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.6e-237 826.2 600 66.8
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 2.1e-237 825.9 600 65.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.1e-237 825.9 551 71.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.8e-236 822.8 729 57.5
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 1.4e-233 813.1 601 68.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 2.2e-231 805.8 606 64.9
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 1.1e-230 803.5 591 65.5
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.6e-229 799.7 600 65.7
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.1e-227 793.5 601 63.6
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 5.6e-227 791.2 625 63.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 3.7e-226 788.5 542 67.9
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 1.8e-225 786.2 613 62.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 1.9e-222 776.2 511 73.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 5.5e-222 774.6 599 61.6
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 2.7e-221 772.3 600 64.0
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 5.1e-212 741.5 1022 41.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 1.4e-204 716.8 601 56.6
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.4e-203 711.8 600 56.3
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.8e-201 706.4 600 56.7
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.3e-194 683.7 619 54.8
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 6.3e-194 681.4 619 54.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 8.2e-194 681.0 542 61.8
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.0e-183 645.2 488 62.3
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 1.1e-182 644.0 608 55.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 3.2e-182 642.5 567 56.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 7.5e-179 631.3 424 71.2
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.8e-169 600.1 610 54.6
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 4.7e-157 558.9 376 71.8
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 6.8e-156 555.1 329 81.2
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.6e-141 507.3 459 54.5
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 4.8e-109 399.4 336 63.7
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.1e-108 398.3 428 45.3
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.5e-97 360.5 548 41.1
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.8e-85 319.7 331 48.3
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 8.2e-85 318.9 175 84.6
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.0e-71 273.5 264 49.2
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.0e-50 203.4 212 45.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.0e-46 191.4 115 79.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.3e-41 174.1 99 85.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 8.3e-37 159.5 128 54.7
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.3e-33 147.1 169 46.7
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 7.3e-33 146.4 481 28.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.2e-30 139.0 134 46.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 2.9e-29 134.4 205 42.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 4.9e-29 133.7 123 52.8
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 6.6e-26 123.2 73 82.2
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 2.8e-24 117.9 88 64.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.2e-22 112.5 204 37.3
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.3e-21 109.0 75 76.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.0e-18 99.4 57 86.0
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 9.6e-17 92.8 64 60.9
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.6e-16 92.0 359 24.8
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 7.6e-14 83.2 50 82.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 6.4e-13 80.1 52 75.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.1e-12 79.3 190 33.2
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.2e-12 77.8 60 55.0
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.4e-12 77.0 163 31.3
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.6e-11 73.9 143 32.2
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 4.6e-11 73.9 54 59.3
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.9e-10 70.9 40 80.0
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.3e-09 67.8 35 85.7
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 5.6e-09 67.0 165 30.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 5.6e-09 67.0 143 29.4
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 6.9e-07 60.1 68 48.5
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.2e-06 59.3 131 28.2


User provided reference genes

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