Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 2.0e-138 496.5 410 100.0
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 3.7e-97 359.4 393 75.3
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 9.8e-82 308.1 392 55.6
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.7e-71 273.5 190 78.4
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 7.8e-71 271.9 394 54.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 8.6e-70 268.5 189 75.1
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 7.3e-69 265.4 183 75.4
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 1.4e-59 234.6 187 67.9
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 1.4e-59 234.6 393 41.7
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 1.5e-58 231.1 398 43.2
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 2.4e-51 207.2 395 39.7
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 5.3e-51 206.1 189 64.6
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 4.9e-49 199.5 191 59.7
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 9.3e-48 195.3 143 71.3
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 2.7e-47 193.7 156 68.6
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 6.0e-47 192.6 152 65.8
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 6.7e-46 189.1 191 57.1
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 1.5e-45 188.0 168 56.5
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 1.3e-44 184.9 185 58.9
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.3e-44 184.9 172 58.7
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 8.1e-44 182.2 195 56.9
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 1.4e-43 181.4 122 71.3
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 4.0e-43 179.9 181 56.4
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 6.9e-43 179.1 156 60.3
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 3.4e-42 176.8 157 58.0
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 3.4e-42 176.8 130 67.7
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 3.4e-42 176.8 200 52.5
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.5e-42 176.4 193 50.8
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 7.6e-42 175.6 188 56.9
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 1.3e-41 174.9 129 65.9
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 1.7e-41 174.5 105 83.8
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 1.7e-41 174.5 193 50.3
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 2.9e-41 173.7 121 71.9
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 2.9e-41 173.7 151 58.3
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 3.8e-41 173.3 196 51.0
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 1.1e-40 171.8 151 59.6
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.4e-40 171.4 136 64.7
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 1.4e-40 171.4 188 53.7
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 1.4e-40 171.4 151 60.9
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-40 171.0 157 57.3
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-40 171.0 157 57.3
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 1.9e-40 171.0 178 56.2
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 2.5e-40 170.6 151 58.9
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 3.2e-40 170.2 182 54.4
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 4.2e-40 169.9 124 68.5
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.2e-40 169.9 178 55.6
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 4.2e-40 169.9 180 53.9
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 5.5e-40 169.5 122 68.9
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 5.5e-40 169.5 139 61.2
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 5.5e-40 169.5 157 59.2
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 9.3e-40 168.7 191 54.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 1.2e-39 168.3 158 55.1
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.6e-39 167.9 163 55.2
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 2.1e-39 167.5 196 51.5
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 3.5e-39 166.8 127 65.4
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 4.6e-39 166.4 152 59.2
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 6.0e-39 166.0 147 61.2
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 7.9e-39 165.6 129 65.1
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 1.8e-38 164.5 129 63.6
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.3e-38 164.1 149 57.0
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.3e-38 164.1 177 53.7
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 3.0e-38 163.7 187 50.8
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 1.5e-37 161.4 150 58.0
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.9e-37 161.0 168 53.6
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 2.5e-37 160.6 196 50.0
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 2.5e-37 160.6 150 56.7
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.3e-37 160.2 188 50.5
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.3e-37 160.2 188 50.5
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 1.3e-36 158.3 229 46.3
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.6e-36 157.9 181 49.7
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 2.1e-36 157.5 181 49.7
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 2.1e-36 157.5 179 50.3
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 2.8e-36 157.1 170 52.4
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 2.8e-36 157.1 121 62.8
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 2.8e-36 157.1 121 62.8
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 2.8e-36 157.1 121 62.8
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 2.8e-36 157.1 121 62.8
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 2.8e-36 157.1 192 46.4
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.8e-36 157.1 195 47.2
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 3.7e-36 156.8 171 48.5
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.7e-36 156.8 127 61.4
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 8.2e-36 155.6 122 61.5
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.1e-35 155.2 132 58.3
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.4e-35 154.8 199 47.7
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.8e-35 154.5 115 67.0
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.4e-35 154.1 194 46.9
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 2.4e-35 154.1 116 66.4
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 4.1e-35 153.3 103 73.8
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 5.3e-35 152.9 136 55.9
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 5.3e-35 152.9 132 60.6
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 5.3e-35 152.9 132 60.6
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.5e-34 151.4 125 60.0
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 5.9e-34 149.4 139 55.4
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 7.6e-34 149.1 123 59.3
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 2.9e-33 147.1 246 40.7
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.8e-33 146.7 155 51.6
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 3.8e-33 146.7 127 58.3
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 5.0e-33 146.4 103 67.0
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 8.4e-33 145.6 173 46.8
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 8.4e-33 145.6 214 43.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.1e-32 145.2 238 40.3
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.5e-32 144.1 113 64.6
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 2.5e-32 144.1 184 47.3
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 4.2e-32 143.3 153 54.2
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 4.2e-32 143.3 153 54.2
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 5.5e-32 142.9 157 51.6
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.6e-31 141.4 120 56.7
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.6e-31 141.4 136 57.4
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.6e-31 141.4 168 48.2
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.5e-31 140.2 105 65.7
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 3.5e-31 140.2 170 51.2
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 4.6e-31 139.8 106 67.0
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 1.0e-30 138.7 169 47.9
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.8e-30 137.9 160 49.4
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 1.1e-29 135.2 142 53.5
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 1.1e-29 135.2 210 45.7
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.1e-29 135.2 173 46.2
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 3.3e-29 133.7 121 61.2
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 2.8e-28 130.6 152 52.6
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 4.1e-27 126.7 165 49.7
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 5.3e-27 126.3 188 42.6
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 2.6e-26 124.0 103 59.2
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 7.7e-26 122.5 131 50.4
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 2.9e-25 120.6 107 59.8
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 6.5e-25 119.4 194 42.8
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 1.1e-24 118.6 107 58.9
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.5e-24 117.5 105 55.2
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.2e-24 117.1 94 61.7
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 3.3e-21 107.1 112 46.4
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 7.4e-21 105.9 118 48.3
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 9.7e-21 105.5 118 48.3
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 1.7e-20 104.8 93 58.1
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 1.8e-19 101.3 157 42.7
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 3.4e-18 97.1 116 47.4
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 7.2e-16 89.4 179 35.8
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.0e-14 84.0 71 62.0
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 1.7e-12 78.2 193 35.2
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 4.1e-11 73.6 106 35.8
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 5.3e-11 73.2 83 49.4
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 2.6e-10 70.9 127 37.8
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 7.7e-10 69.3 57 59.6
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 3.6e-07 60.5 81 39.5


User provided reference genes

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