Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28589 Trifolium pratense HOM05D002352 ORTHO05D016619 3.9e-45 184.5 97 100.0
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 2.2e-16 89.0 141 48.2
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 6.5e-16 87.4 141 47.5
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.2e-15 85.1 141 46.8
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 5.5e-15 84.3 141 46.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 7.1e-15 84.0 141 45.4
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.6e-14 82.8 141 45.4
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.1e-14 82.4 141 46.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 2.7e-14 82.0 141 44.7
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 6.0e-14 80.9 141 44.7
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 3.0e-13 78.6 141 43.3
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 5.1e-13 77.8 141 44.7
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 8.7e-13 77.0 141 43.3
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.5e-12 76.3 141 44.0
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 7.4e-12 73.9 141 42.6
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.6e-11 72.8 141 41.8
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.8e-11 71.2 141 40.4
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 4.8e-11 71.2 94 47.9
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 6.3e-11 70.9 140 42.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 6.3e-11 70.9 140 42.1
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 8.2e-11 70.5 140 42.1
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.2e-11 70.5 140 42.1
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.2e-11 70.5 140 42.1
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 8.2e-11 70.5 141 42.6
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.1e-10 70.1 141 40.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-10 70.1 141 41.8
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-10 70.1 141 41.8
TPR.G18540 Trifolium pratense HOM05D002352 ORTHO05D016619 1.1e-10 70.1 37 91.9
TPR.G20335 Trifolium pratense HOM05D002352 ORTHO05D016619 1.1e-10 70.1 37 91.9
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.4e-10 69.7 130 43.8
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.8e-10 69.3 141 41.8
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.8e-10 69.3 141 41.8
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.8e-10 69.3 140 41.4
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.4e-10 68.9 141 41.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 3.1e-10 68.6 141 40.4
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 3.1e-10 68.6 141 42.6
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 4.1e-10 68.2 141 41.8
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 5.3e-10 67.8 141 40.4
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 5.3e-10 67.8 141 39.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 6.9e-10 67.4 140 39.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 6.9e-10 67.4 140 39.3
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 9.0e-10 67.0 141 39.7
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.2e-09 66.6 141 39.7
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.2e-09 66.6 141 40.4
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.5e-09 66.2 141 39.7
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.0e-09 65.9 140 37.9
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 2.6e-09 65.5 141 39.7
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.6e-09 65.5 141 39.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.6e-09 65.5 141 39.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.4e-09 65.1 141 39.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.4e-09 65.1 141 39.7
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 3.4e-09 65.1 141 38.3
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.4e-09 65.1 141 38.3
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.5e-09 64.7 141 39.0
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 4.5e-09 64.7 141 39.0
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 4.5e-09 64.7 141 39.0
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 4.5e-09 64.7 141 39.0
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 4.5e-09 64.7 141 39.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 5.9e-09 64.3 141 39.0
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 5.9e-09 64.3 141 38.3
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 5.9e-09 64.3 141 38.3
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 39.0
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 38.3
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 38.3
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 38.3
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 38.3
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 39.7
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 39.0
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.0e-08 63.5 141 39.0
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 1.3e-08 63.2 137 38.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-08 63.2 141 40.4
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.7e-08 62.8 141 38.3
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.7e-08 62.8 141 39.0
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.2e-08 62.4 141 38.3
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.2e-08 62.4 141 39.0
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.2e-08 62.4 138 37.7
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.2e-08 62.4 141 38.3
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.2e-08 62.4 141 39.0
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.9e-08 62.0 141 36.9
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.8e-08 61.6 138 37.0
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 3.8e-08 61.6 141 36.9
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 6.5e-08 60.8 141 36.2
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 6.5e-08 60.8 141 36.9
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 8.5e-08 60.5 141 36.9
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 8.5e-08 60.5 138 37.0
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 8.5e-08 60.5 138 37.0
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.1e-07 60.1 141 39.0
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.1e-07 60.1 141 37.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.1e-07 60.1 138 36.2
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.4e-07 59.7 138 37.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.9e-07 59.3 138 37.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 2.5e-07 58.9 141 35.5
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.5e-07 58.9 141 35.5
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.2e-07 58.5 141 37.6
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.2e-07 58.5 138 38.4
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 3.2e-07 58.5 130 38.5
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 3.2e-07 58.5 141 36.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 3.2e-07 58.5 141 36.2
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 4.2e-07 58.2 141 36.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 7.2e-07 57.4 141 35.5
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 9.3e-07 57.0 41 73.2
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.2e-06 56.6 138 34.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.6e-06 56.2 141 35.5
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-06 56.2 138 37.0
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 2.1e-06 55.8 141 36.2
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.1e-06 55.8 143 36.4
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 2.1e-06 55.8 141 33.3
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 2.1e-06 55.8 141 34.0
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 2.7e-06 55.5 138 37.0
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.6e-06 55.1 141 34.8
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 6.1e-06 54.3 146 33.6
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 7.9e-06 53.9 41 68.3
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 7.9e-06 53.9 135 37.0


User provided reference genes

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