Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2856 Trifolium pratense HOM05D004314 ORTHO05D005627 3.4e-130 468.4 247 100.0
Medtr4g093570 Medicago truncatula HOM05D004314 ORTHO05D005627 6.5e-97 357.8 199 83.9
Psat7g101160 Pisum sativum HOM05D004314 ORTHO05D005627 8.0e-95 350.9 199 83.4
Ca_18382_v3 Cicer arietinum L. HOM05D004314 ORTHO05D005627 1.0e-94 350.5 199 81.4
TPR.G2844 Trifolium pratense HOM05D004314 ORTHO05D005627 1.4e-94 350.1 199 82.9
Medtr4g093580 Medicago truncatula HOM05D004314 ORTHO05D005627 6.8e-94 347.8 201 82.6
Lj4g0019883 Lotus japonicus HOM05D004314 ORTHO05D005627 8.8e-94 347.4 201 82.6
Glyma.07G182100 Glycine max HOM05D004314 ORTHO05D005627 5.4e-91 338.2 199 79.9
TPR.G22394 Trifolium pratense HOM05D004314 ORTHO05D005627 1.2e-90 337.0 199 79.9
Phvul.002G213100 Phaseolus vulgaris HOM05D004314 ORTHO05D005627 6.5e-89 331.3 199 79.9
VMungo0251G2073 Vigna mungo HOM05D004314 ORTHO05D005627 1.2e-87 327.0 199 79.4
Lalb_Chr05g0217821 Lupinus albus HOM05D004314 ORTHO05D005627 1.0e-86 323.9 206 76.7
arahy.Tifrunner.gnm1.ann1.1Z5YUN Arachis hypogaea HOM05D004314 ORTHO05D005627 6.8e-86 321.2 201 75.1
arahy.Tifrunner.gnm1.ann1.NRM1UC Arachis hypogaea HOM05D004314 ORTHO05D005627 2.6e-85 319.3 201 74.1
Prupe.8G070200 Prunus persica HOM05D004314 ORTHO05D005627 4.1e-83 312.0 196 73.0
FAN15G2873 Fragaria x ananassa HOM05D004314 ORTHO05D005627 9.1e-83 310.8 182 78.0
FvH4_2g11570 Fragaria vesca HOM05D004314 ORTHO05D005627 2.0e-82 309.7 191 74.3
FAN02G2826 Fragaria x ananassa HOM05D004314 ORTHO05D005627 2.0e-82 309.7 182 77.5
Potri.007G115900 Populus trichocarpa HOM05D004314 ORTHO05D005627 7.7e-82 307.8 201 71.6
Sabra07G0094400 Salix brachista HOM05D004314 ORTHO05D005627 7.7e-82 307.8 201 71.6
RcHm_v2.0_Chr6g0270931 Rosa chinensis HOM05D004314 ORTHO05D005627 1.0e-81 307.4 195 72.8
MD10G1054600 Malus domestica HOM05D004314 ORTHO05D005627 5.0e-81 305.1 184 76.6
CANSAT54G1432 Cannabis sativa HOM05D004314 ORTHO05D005627 2.5e-80 302.8 184 76.6
FAN24G0404 Fragaria x ananassa HOM05D004314 ORTHO05D005627 4.2e-80 302.0 199 71.4
Dinv24147 Davidia involucrata HOM05D004314 ORTHO05D005627 1.6e-79 300.1 198 71.2
Cfa005737 Carpinus fangiana HOM05D004314 ORTHO05D005627 2.1e-79 299.7 200 72.0
Manes.07G041800 Manihot esculenta HOM05D004314 ORTHO05D005627 2.1e-79 299.7 201 70.1
PSO675G0906 Papaver somniferum HOM05D004314 ORTHO05D005627 2.1e-79 299.7 196 69.9
Duzib248G0634 Durio zibethinus HOM05D004314 ORTHO05D005627 4.7e-79 298.5 203 70.9
Gorai.008G017500 Gossypium raimondii HOM05D004314 ORTHO05D005627 6.1e-79 298.1 192 74.0
Haze_10517 Corylus avellana HOM05D004314 ORTHO05D005627 1.4e-78 297.0 200 70.5
TWI59G0405 Tripterygium wilfordii HOM05D004314 ORTHO05D005627 1.8e-78 296.6 194 71.6
Gohir.A12G016600 Gossypium hirsutum HOM05D004314 ORTHO05D005627 5.2e-78 295.0 195 71.8
CsaV3_7G006870 Cucumis sativus L. HOM05D004314 ORTHO05D005627 6.8e-78 294.7 199 69.3
DCAR_021906 Daucus carota HOM05D004314 ORTHO05D005627 6.8e-78 294.7 203 69.5
MELO3C018607.2 Cucumis melo HOM05D004314 ORTHO05D005627 8.9e-78 294.3 190 70.5
GSVIVG01015663001 Vitis vinifera HOM05D004314 ORTHO05D005627 8.9e-78 294.3 201 71.1
PSO541G1934 Papaver somniferum HOM05D004314 ORTHO05D005627 1.2e-77 293.9 196 68.9
Atru.chr6.1274 Acer truncatum HOM05D004314 ORTHO05D005627 2.0e-77 293.1 183 74.3
Thecc.02G129100 Theobroma cacao HOM05D004314 ORTHO05D005627 2.0e-77 293.1 203 70.0
Sed0001289 Sechium edule HOM05D004314 ORTHO05D005627 3.4e-77 292.4 194 70.1
ClCG09G016090 Citrullus lanatus HOM05D004314 ORTHO05D005627 4.4e-77 292.0 194 70.6
Cc02_g20900 Coffea canephora HOM05D004314 ORTHO05D005627 4.4e-77 292.0 201 68.7
Lj5C229G21 Lonicera japonica HOM05D004314 ORTHO05D005627 5.7e-77 291.6 200 67.0
Cpa.g.sc20.4 Carica papaya HOM05D004314 ORTHO05D005627 1.3e-76 290.4 198 68.7
Ciclev10028599m.g Citrus clementina HOM05D004314 ORTHO05D005627 1.7e-76 290.0 198 69.7
ECA234G3638 Erigeron canadensis HOM05D004314 ORTHO05D005627 2.2e-76 289.7 184 71.7
Gohir.D12G017200 Gossypium hirsutum HOM05D004314 ORTHO05D005627 2.2e-76 289.7 196 70.9
PGR142G0142 Punica granatum HOM05D004314 ORTHO05D005627 2.2e-76 289.7 204 67.2
QL11p025244 Quercus lobata HOM05D004314 ORTHO05D005627 2.2e-76 289.7 201 68.2
Migut.B00548 Erythranthe guttata HOM05D004314 ORTHO05D005627 2.9e-76 289.3 191 68.1
CARHR278310 Cardamine hirsuta HOM05D004314 ORTHO05D005627 6.3e-76 288.1 182 73.6
TAR381G1143 Trochodendron aralioides HOM05D004314 ORTHO05D005627 6.3e-76 288.1 194 68.6
CSS0015344 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 8.3e-76 287.7 182 70.9
Os07g0485100 Oryza sativa ssp. japonica HOM05D004314 ORTHO05D005627 8.3e-76 287.7 180 71.7
CSS0039933 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 1.4e-75 287.0 182 70.9
AT5G64370 Arabidopsis thaliana HOM05D004314 ORTHO05D005627 1.8e-75 286.6 184 73.4
Lsat_1_v5_gn_5_110080 Lactuca sativa HOM05D004314 ORTHO05D005627 1.8e-75 286.6 195 67.2
Nitab4.5_0000313g0120 Nicotiana tabacum HOM05D004314 ORTHO05D005627 1.8e-75 286.6 183 70.5
Solyc10g047630.2 Solanum lycopersicum HOM05D004314 ORTHO05D005627 1.8e-75 286.6 197 68.5
Sc08g0003970 Simmondsia chinensis HOM05D004314 ORTHO05D005627 2.4e-75 286.2 191 68.1
PGSC0003DMG400029019 Solanum tuberosum HOM05D004314 ORTHO05D005627 2.4e-75 286.2 197 68.0
CSS0022890 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 3.2e-75 285.8 191 67.5
Sp2g27460 Schrenkiella parvula HOM05D004314 ORTHO05D005627 3.2e-75 285.8 201 68.7
AL8G41730 Arabidopsis lyrata HOM05D004314 ORTHO05D005627 4.1e-75 285.4 196 69.9
Aa31LG1G17530 Aethionema arabicum HOM05D004314 ORTHO05D005627 5.4e-75 285.0 196 69.9
HanXRQChr10g0297771 Helianthus annuus HOM05D004314 ORTHO05D005627 5.4e-75 285.0 203 65.0
Zm00001eb321550 Zea mays HOM05D004314 ORTHO05D005627 7.0e-75 284.6 180 72.2
SalBow6G4888 Salvia bowleyana HOM05D004314 ORTHO05D005627 1.2e-74 283.9 191 67.0
Actinidia02394 Actinidia chinensis HOM05D004314 ORTHO05D005627 1.6e-74 283.5 195 68.7
BraA06t26047Z Brassica rapa HOM05D004314 ORTHO05D005627 1.6e-74 283.5 201 68.7
Thhalv10004324m.g Eutrema salsugineum HOM05D004314 ORTHO05D005627 1.6e-74 283.5 182 73.1
SalBow6G1754 Salvia bowleyana HOM05D004314 ORTHO05D005627 1.6e-74 283.5 191 67.0
Eucgr.G00868 Eucalyptus grandis HOM05D004314 ORTHO05D005627 2.0e-74 283.1 182 71.4
Nitab4.5_0008998g0030 Nicotiana tabacum HOM05D004314 ORTHO05D005627 2.0e-74 283.1 183 69.4
Hund00381 Selenicereus undatus HOM05D004314 ORTHO05D005627 2.0e-74 283.1 206 65.5
A06p31050 Brassica napus HOM05D004314 ORTHO05D005627 2.7e-74 282.7 201 68.2
Carub.0008s2517 Capsella rubella HOM05D004314 ORTHO05D005627 2.7e-74 282.7 182 73.6
CiPaw.06G157900 Carya illinoinensis HOM05D004314 ORTHO05D005627 2.7e-74 282.7 198 66.7
BolC3t18450H Brassica oleracea HOM05D004314 ORTHO05D005627 3.5e-74 282.3 182 72.5
vmacro01861 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 5.9e-74 281.6 184 69.6
Migut.N01097 Erythranthe guttata HOM05D004314 ORTHO05D005627 7.8e-74 281.2 198 66.2
BcaC01g06912 Brassica carinata HOM05D004314 ORTHO05D005627 1.0e-73 280.8 182 72.0
C03p61910 Brassica napus HOM05D004314 ORTHO05D005627 1.0e-73 280.8 182 72.0
BcaC04g23320 Brassica carinata HOM05D004314 ORTHO05D005627 2.9e-73 279.3 201 66.7
C09p09760 Brassica napus HOM05D004314 ORTHO05D005627 2.9e-73 279.3 201 66.7
BolC9t53887H Brassica oleracea HOM05D004314 ORTHO05D005627 2.9e-73 279.3 201 66.7
SGA_v2.0_scaffold83G26378 Striga asiatica HOM05D004314 ORTHO05D005627 3.9e-73 278.9 202 64.9
THA.LOC104818523 Tarenaya hassleriana HOM05D004314 ORTHO05D005627 5.0e-73 278.5 182 70.3
Ah.01g023920 Amaranthus hybridus HOM05D004314 ORTHO05D005627 1.5e-72 276.9 207 64.3
MSTRG.5286 Avicennia marina HOM05D004314 ORTHO05D005627 1.5e-72 276.9 182 69.8
BcaC01g06917 Brassica carinata HOM05D004314 ORTHO05D005627 1.5e-72 276.9 182 71.4
Nn5g29880 Nelumbo nucifera HOM05D004314 ORTHO05D005627 3.3e-72 275.8 241 56.4
Oeu014196.1 Olea europaea HOM05D004314 ORTHO05D005627 7.3e-72 274.6 183 67.2
MBI16_g27581_MAGBIO Magnolia biondii HOM05D004314 ORTHO05D005627 9.5e-72 274.2 200 64.5
A09p08650 Brassica napus HOM05D004314 ORTHO05D005627 1.6e-71 273.5 180 70.6
BraA09t36514Z Brassica rapa HOM05D004314 ORTHO05D005627 1.6e-71 273.5 180 70.6
CAN.G1223.2 Capsicum annuum HOM05D004314 ORTHO05D005627 1.6e-71 273.5 196 64.8
HPP92_014474 Vanilla planifolia HOM05D004314 ORTHO05D005627 3.6e-71 272.3 200 63.5
EL10Ac9g22069 Beta vulgaris HOM05D004314 ORTHO05D005627 6.1e-71 271.6 201 61.7
AUR62027107 Chenopodium quinoa HOM05D004314 ORTHO05D005627 6.1e-71 271.6 200 63.5
Peaxi162Scf00003g03234 Petunia axillaris HOM05D004314 ORTHO05D005627 1.0e-70 270.8 235 57.0
ATR0767G162 Amborella trichopoda HOM05D004314 ORTHO05D005627 8.9e-70 267.7 201 64.7
Gohir.D03G101100 Gossypium hirsutum HOM05D004314 ORTHO05D005627 8.9e-70 267.7 195 66.7
CiPaw.05G029300 Carya illinoinensis HOM05D004314 ORTHO05D005627 7.5e-69 264.6 197 62.9
Rhsim11G0142100 Rhododendron simsii HOM05D004314 ORTHO05D005627 1.9e-67 260.0 217 59.4
Gorai.002G038200 Gossypium raimondii HOM05D004314 ORTHO05D005627 3.2e-67 259.2 181 70.2
CDE02G1136 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 4.1e-67 258.8 198 63.6
Gorai.003G106500 Gossypium raimondii HOM05D004314 ORTHO05D005627 9.2e-67 257.7 195 64.1
unitig_744.g24190 Utricularia gibba HOM05D004314 ORTHO05D005627 6.0e-66 255.0 201 61.7
BcaNung06256 Brassica carinata HOM05D004314 ORTHO05D005627 1.3e-65 253.8 182 68.1
Hma1.2p1_1093F.1_g256240 Hydrangea macrophylla HOM05D004314 ORTHO05D005627 2.5e-64 249.6 159 72.3
Gohir.D07G103100 Gossypium hirsutum HOM05D004314 ORTHO05D005627 1.2e-63 247.3 158 74.1
SEGI_34858 Sequoiadendron giganteum HOM05D004314 ORTHO05D005627 5.2e-62 241.9 180 61.1
Eucgr.G00862 Eucalyptus grandis HOM05D004314 ORTHO05D005627 1.6e-58 230.3 151 68.9
Gohir.D01G028700 Gossypium hirsutum HOM05D004314 ORTHO05D005627 2.7e-58 229.6 207 58.5
Haze_10516 Corylus avellana HOM05D004314 ORTHO05D005627 1.7e-57 226.9 237 52.3
Gorai.007G289000 Gossypium raimondii HOM05D004314 ORTHO05D005627 2.1e-55 219.9 155 69.7
Pp3c3_36650 Physcomitrium patens HOM05D004314 ORTHO05D005627 2.6e-53 213.0 192 53.6
Mapoly0006s0006 Marchantia polymorpha HOM05D004314 ORTHO05D005627 1.3e-52 210.7 186 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1110 Anthoceros agrestis HOM05D004314 ORTHO05D005627 2.9e-52 209.5 177 52.5
AUR62012883 Chenopodium quinoa HOM05D004314 ORTHO05D005627 3.5e-50 202.6 182 56.0
Gohir.D11G269150 Gossypium hirsutum HOM05D004314 ORTHO05D005627 2.8e-47 193.0 131 72.5
HanXRQChr04g0116191 Helianthus annuus HOM05D004314 ORTHO05D005627 2.4e-46 189.9 158 60.8
SMO356G0581 Selaginella moellendorffii HOM05D004314 ORTHO05D005627 1.2e-45 187.6 155 56.1
COL.COLO4_32391 Corchorus olitorius HOM05D004314 ORTHO05D005627 5.8e-45 185.3 158 59.5
CBR_g26363 Chara braunii HOM05D004314 ORTHO05D005627 1.1e-43 181.0 200 47.0
PRCOL_00005583 Prasinoderma coloniale HOM05D004314 ORTHO05D005627 7.8e-42 174.9 184 45.1
Cre01.g022650 Chlamydomonas reinhardtii HOM05D004314 ORTHO05D005627 1.7e-41 173.7 183 44.3
Haze_27162 Corylus avellana HOM05D004314 ORTHO05D005627 7.3e-40 168.3 177 48.6
Aqoxy6G00870 Aquilegia oxysepala HOM05D004314 ORTHO05D005627 2.3e-33 146.7 100 69.0
Sopen10g018040 Solanum pennellii HOM05D004314 ORTHO05D005627 3.6e-31 139.4 75 80.0
CAN.G1223.1 Capsicum annuum HOM05D004314 ORTHO05D005627 4.9e-28 129.0 75 72.0
Gorai.006G064500 Gossypium raimondii HOM05D004314 ORTHO05D025709 8.7e-25 118.2 61 82.0
Gorai.013G168600 Gossypium raimondii HOM05D004314 ORTHO05D025709 8.7e-25 118.2 61 82.0
Gorai.011G144100 Gossypium raimondii HOM05D004314 ORTHO05D025709 1.1e-24 117.9 61 82.0
Gohir.D06G146450 Gossypium hirsutum HOM05D004314 ORTHO05D047323 4.3e-24 115.9 61 78.7
CDE01G0635 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 2.8e-23 113.2 63 77.8
HanXRQChr06g0177281 Helianthus annuus HOM05D004314 ORTHO05D005627 5.3e-22 109.0 65 76.9
BcaB04g19968 Brassica carinata HOM05D004314 ORTHO05D000740 1.2e-21 107.8 55 80.0
Gohir.D10G130350 Gossypium hirsutum HOM05D004314 ORTHO05D025709 2.6e-21 106.7 56 80.4
Gorai.011G177000 Gossypium raimondii HOM05D004314 ORTHO05D047323 2.6e-21 106.7 56 80.4
vmacro01862 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 3.4e-21 106.3 124 42.7
MCO09G090 Micromonas commoda HOM05D004314 ORTHO05D005627 1.3e-20 104.4 77 59.7
Gohir.D09G023125 Gossypium hirsutum HOM05D004314 ORTHO05D025709 1.1e-19 101.3 56 76.8
CSS0001562 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 3.5e-18 96.3 55 70.9
Actinidia00307 Actinidia chinensis HOM05D004314 ORTHO05D018179 2.1e-15 87.0 78 53.8
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 9.0e-14 81.6 73 57.5
Eucgr.G00867 Eucalyptus grandis HOM05D004314 ORTHO05D005627 6.5e-12 75.5 52 61.5


User provided reference genes

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