Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28544 Trifolium pratense HOM05D001653 ORTHO05D001751 6.5e-31 136.7 68 100.0
Medtr4g134760 Medicago truncatula HOM05D001653 ORTHO05D001751 3.8e-15 84.3 49 81.6
TPR.G27318 Trifolium pratense HOM05D001653 ORTHO05D001751 3.8e-15 84.3 49 81.6
Ca_13536_v3 Cicer arietinum L. HOM05D001653 ORTHO05D001751 5.0e-15 84.0 49 77.6
TPR.G2970 Trifolium pratense HOM05D000961 ORTHO05D000841 6.5e-15 83.6 74 64.9
Lj4g0025919 Lotus japonicus HOM05D001653 ORTHO05D001751 8.5e-15 83.2 49 75.5
Phvul.003G075400 Phaseolus vulgaris HOM05D001653 ORTHO05D001751 8.5e-15 83.2 49 75.5
TPR.G14607 Trifolium pratense HOM05D000961 ORTHO05D000841 1.5e-14 82.4 51 76.5
Psat4g000800 Pisum sativum HOM05D001653 ORTHO05D001751 4.2e-14 80.9 49 75.5
VMungo1215G0544 Vigna mungo HOM05D001653 ORTHO05D001751 2.1e-13 78.6 49 69.4
TPR.G33820 Trifolium pratense HOM05D001653 ORTHO05D001751 6.1e-13 77.0 55 69.1
Lalb_Chr13g0304461 Lupinus albus HOM05D001653 ORTHO05D001751 1.4e-12 75.9 47 70.2
arahy.Tifrunner.gnm1.ann1.6L045R Arachis hypogaea HOM05D001653 ORTHO05D001751 3.0e-12 74.7 49 71.4
arahy.Tifrunner.gnm1.ann1.U9C9EB Arachis hypogaea HOM05D001653 ORTHO05D001751 3.0e-12 74.7 49 71.4
Glyma.07G273300 Glycine max HOM05D001653 ORTHO05D001751 2.6e-11 71.6 49 67.3
FAN04G3075 Fragaria x ananassa HOM05D001653 ORTHO05D001751 2.8e-10 68.2 51 64.7
FAN18G0033 Fragaria x ananassa HOM05D001653 ORTHO05D001751 3.7e-10 67.8 56 60.7
Rhsim01G0195500 Rhododendron simsii HOM05D001653 ORTHO05D001751 3.7e-10 67.8 48 66.7
FvH4_5g39140 Fragaria vesca HOM05D001653 ORTHO05D001751 6.3e-10 67.0 49 67.3
FAN08G1492 Fragaria x ananassa HOM05D001653 ORTHO05D001751 6.3e-10 67.0 49 67.3
FAN18G2341 Fragaria x ananassa HOM05D001653 ORTHO05D001751 6.3e-10 67.0 49 67.3
FAN13G2677 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.1e-09 66.2 49 65.3
Gohir.D13G119400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 1.1e-09 66.2 47 63.8
Gorai.013G133800 Gossypium raimondii HOM05D001653 ORTHO05D001751 1.1e-09 66.2 47 63.8
QL02p101947 Quercus lobata HOM05D001653 ORTHO05D001751 1.1e-09 66.2 47 66.0
QL02p102580 Quercus lobata HOM05D001653 ORTHO05D001751 1.1e-09 66.2 47 66.0
Gohir.A13G116100 Gossypium hirsutum HOM05D001653 ORTHO05D001751 1.4e-09 65.9 47 63.8
QL02p102101 Quercus lobata HOM05D001653 ORTHO05D001751 1.4e-09 65.9 47 66.0
QL02p102618 Quercus lobata HOM05D001653 ORTHO05D001751 1.4e-09 65.9 47 66.0
QL02p101981 Quercus lobata HOM05D001653 ORTHO05D001751 1.8e-09 65.5 50 62.0
Haze_13949 Corylus avellana HOM05D001653 ORTHO05D001751 2.4e-09 65.1 47 66.0
TAR381G0969 Trochodendron aralioides HOM05D001653 ORTHO05D001751 2.4e-09 65.1 47 66.0
vmacro19844 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 2.4e-09 65.1 58 51.7
Cfa004464 Carpinus fangiana HOM05D001653 ORTHO05D001751 3.1e-09 64.7 47 66.0
Peaxi162Scf00011g01639 Petunia axillaris HOM05D001653 ORTHO05D001751 3.1e-09 64.7 52 55.8
CiPaw.03G015600 Carya illinoinensis HOM05D001653 ORTHO05D001751 4.1e-09 64.3 47 63.8
Migut.B00734 Erythranthe guttata HOM05D001653 ORTHO05D001751 4.1e-09 64.3 46 65.2
Thecc.08G177200 Theobroma cacao HOM05D001653 ORTHO05D001751 4.1e-09 64.3 47 59.6
MBI03_g28418_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 5.4e-09 63.9 47 61.7
PGSC0003DMG401024877 Solanum tuberosum HOM05D001653 ORTHO05D001751 5.4e-09 63.9 49 61.2
Ciclev10018742m.g Citrus clementina HOM05D001653 ORTHO05D001751 7.0e-09 63.5 47 63.8
Lsat_1_v5_gn_7_76900 Lactuca sativa HOM05D001653 ORTHO05D001751 7.0e-09 63.5 47 59.6
MD15G1440400 Malus domestica HOM05D001653 ORTHO05D001751 7.0e-09 63.5 57 56.1
Nn5g27282 Nelumbo nucifera HOM05D001653 ORTHO05D001751 7.0e-09 63.5 47 61.7
Nitab4.5_0002546g0070 Nicotiana tabacum HOM05D001653 ORTHO05D001751 7.0e-09 63.5 52 55.8
TWI59G1321 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 7.0e-09 63.5 47 61.7
CANSAT25G0427 Cannabis sativa HOM05D001653 ORTHO05D001751 9.1e-09 63.2 47 63.8
Cfa008088 Carpinus fangiana HOM05D001653 ORTHO05D001751 9.1e-09 63.2 47 63.8
Haze_10021 Corylus avellana HOM05D001653 ORTHO05D001751 9.1e-09 63.2 47 63.8
HanXRQChr11g0329671 Helianthus annuus HOM05D001653 ORTHO05D001751 9.1e-09 63.2 57 54.4
QL02p102066 Quercus lobata HOM05D001653 ORTHO05D001751 9.1e-09 63.2 47 63.8
Solyc01g103230.3 Solanum lycopersicum HOM05D001653 ORTHO05D001751 9.1e-09 63.2 46 63.0
Sopen01g045650 Solanum pennellii HOM05D001653 ORTHO05D001751 9.1e-09 63.2 46 63.0
Duzib177G0515 Durio zibethinus HOM05D001653 ORTHO05D001751 1.2e-08 62.8 47 61.7
QL09p002073 Quercus lobata HOM05D001653 ORTHO05D001751 1.2e-08 62.8 47 59.6
RcHm_v2.0_Chr7g0241141 Rosa chinensis HOM05D001653 ORTHO05D001751 1.2e-08 62.8 44 68.2
Atru.chr6.388 Acer truncatum HOM05D001653 ORTHO05D001751 1.6e-08 62.4 47 61.7
ECA236G3916 Erigeron canadensis HOM05D001653 ORTHO05D001751 1.6e-08 62.4 57 50.9
Prupe.1G582500 Prunus persica HOM05D001653 ORTHO05D001751 1.6e-08 62.4 47 66.0
TWI12G0246 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.6e-08 62.4 57 52.6
TWI12G1458 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.6e-08 62.4 57 52.6
Nitab4.5_0001057g0190 Nicotiana tabacum HOM05D001653 ORTHO05D001751 2.0e-08 62.0 46 60.9
SGA_v2.0_scaffold131G34385 Striga asiatica HOM05D001653 ORTHO05D001751 2.0e-08 62.0 55 58.2
ATR1089G086 Amborella trichopoda HOM05D001653 ORTHO05D001751 3.5e-08 61.2 42 66.7
CAN.G855.32 Capsicum annuum HOM05D001653 ORTHO05D001751 3.5e-08 61.2 46 58.7
Cpa.g.sc113.13 Carica papaya HOM05D001653 ORTHO05D001751 4.5e-08 60.8 47 61.7
CiPaw.05G002600 Carya illinoinensis HOM05D001653 ORTHO05D001751 4.5e-08 60.8 46 63.0
Cc02_g23410 Coffea canephora HOM05D001653 ORTHO05D001751 4.5e-08 60.8 46 58.7
Eucgr.I02786 Eucalyptus grandis HOM05D001653 ORTHO05D001751 4.5e-08 60.8 49 59.2
Rhsim11G0121200 Rhododendron simsii HOM05D001653 ORTHO05D001751 4.5e-08 60.8 48 60.4
CSS0019942 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 5.9e-08 60.5 47 59.6
CSS0047627 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 5.9e-08 60.5 47 59.6
DCAR_029164 Daucus carota HOM05D001653 ORTHO05D001751 5.9e-08 60.5 46 65.2
vmacro01696 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 5.9e-08 60.5 61 52.5
vmacro22646 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 5.9e-08 60.5 61 52.5
MD08G1245400 Malus domestica HOM05D001653 ORTHO05D001751 7.7e-08 60.1 47 61.7
Atru.chr13.2485 Acer truncatum HOM05D001653 ORTHO05D001751 1.3e-07 59.3 47 59.6
Lsat_1_v5_gn_7_77280 Lactuca sativa HOM05D001653 ORTHO05D001751 1.3e-07 59.3 46 58.7
Lsat_1_v5_gn_7_77321 Lactuca sativa HOM05D001653 ORTHO05D001751 1.3e-07 59.3 46 58.7
MELO3C022176.2 Cucumis melo HOM05D001653 ORTHO05D001751 1.7e-07 58.9 47 61.7
Lj9A698T60 Lonicera japonica HOM05D001653 ORTHO05D001751 1.7e-07 58.9 47 55.3
AUR62014272 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.3e-07 58.5 48 56.2
Gohir.A12G045400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 2.3e-07 58.5 46 58.7
Gohir.D12G044400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 2.3e-07 58.5 46 58.7
Gorai.008G046700 Gossypium raimondii HOM05D001653 ORTHO05D001751 2.3e-07 58.5 46 58.7
Thecc.02G014100 Theobroma cacao HOM05D001653 ORTHO05D001751 2.3e-07 58.5 39 66.7
Actinidia38984 Actinidia chinensis HOM05D001653 ORTHO05D001751 2.9e-07 58.2 47 57.4
CSS0009591 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 2.9e-07 58.2 46 60.9
CSS0038289 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 2.9e-07 58.2 46 60.9
ClCG08G001040 Citrullus lanatus HOM05D001653 ORTHO05D001751 2.9e-07 58.2 47 59.6
Dinv16113 Davidia involucrata HOM05D001653 ORTHO05D001751 2.9e-07 58.2 39 66.7
HPP92_020530 Vanilla planifolia HOM05D001653 ORTHO05D001751 2.9e-07 58.2 47 57.4
Actinidia29386 Actinidia chinensis HOM05D001653 ORTHO05D001751 3.8e-07 57.8 47 53.2
Ciclev10000199m.g Citrus clementina HOM05D001653 ORTHO05D001751 3.8e-07 57.8 47 55.3
DCAR_006658 Daucus carota HOM05D001653 ORTHO05D001751 3.8e-07 57.8 43 62.8
Os11g0242100 Oryza sativa ssp. japonica HOM05D001653 ORTHO05D001751 3.8e-07 57.8 47 57.4
PGR042G2062 Punica granatum HOM05D001653 ORTHO05D001751 3.8e-07 57.8 47 57.4
GSVIVG01036381001 Vitis vinifera HOM05D001653 ORTHO05D001751 3.8e-07 57.8 49 55.1
Atru.chr13.2483 Acer truncatum HOM05D001653 ORTHO05D001751 5.0e-07 57.4 47 59.6
Dinv29616 Davidia involucrata HOM05D001653 ORTHO05D001751 5.0e-07 57.4 46 60.9
Lj9A289T28 Lonicera japonica HOM05D001653 ORTHO05D001751 5.0e-07 57.4 45 57.8
Potri.004G227200 Populus trichocarpa HOM05D001653 ORTHO05D001751 5.0e-07 57.4 47 53.2
Cpa.g.sc21.79 Carica papaya HOM05D001653 ORTHO05D001751 6.6e-07 57.0 47 57.4
COL.COLO4_17691 Corchorus olitorius HOM05D001653 ORTHO05D001751 6.6e-07 57.0 46 60.9
PGR142G2904 Punica granatum HOM05D001653 ORTHO05D001751 6.6e-07 57.0 39 64.1
ECA236G1434 Erigeron canadensis HOM05D001653 ORTHO05D001751 1.1e-06 56.2 57 52.6
Manes.02G207661 Manihot esculenta HOM05D001653 ORTHO05D001751 1.1e-06 56.2 47 55.3
Manes.10G115000 Manihot esculenta HOM05D001653 ORTHO05D001751 1.1e-06 56.2 47 55.3
Potri.003G003400 Populus trichocarpa HOM05D001653 ORTHO05D001751 1.1e-06 56.2 47 51.1
Lj9A283T34 Lonicera japonica HOM05D001653 ORTHO05D001751 1.5e-06 55.8 39 61.5
Sed0016604 Sechium edule HOM05D001653 ORTHO05D001751 1.5e-06 55.8 47 57.4
GSVIVG01023217001 Vitis vinifera HOM05D001653 ORTHO05D001751 1.5e-06 55.8 47 53.2
CsaV3_5G039980 Cucumis sativus L. HOM05D001653 ORTHO05D001751 1.9e-06 55.5 47 55.3
Duzib132G0784 Durio zibethinus HOM05D001653 ORTHO05D001751 1.9e-06 55.5 40 60.0
TWI75G0255 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.9e-06 55.5 49 55.1
Aqoxy5G00840 Aquilegia oxysepala HOM05D001653 ORTHO05D001751 2.5e-06 55.1 47 55.3
arahy.Tifrunner.gnm1.ann1.604M1P Arachis hypogaea HOM05D001653 ORTHO05D001751 2.5e-06 55.1 48 62.5
MELO3C026480.2 Cucumis melo HOM05D001653 ORTHO05D001751 2.5e-06 55.1 47 57.4
CsaV3_5G014080 Cucumis sativus L. HOM05D001653 ORTHO05D001751 2.5e-06 55.1 47 57.4
Eucgr.F02980 Eucalyptus grandis HOM05D001653 ORTHO05D001751 2.5e-06 55.1 47 53.2
EL10Ac6g14027 Beta vulgaris HOM05D001653 ORTHO05D001751 3.3e-06 54.7 48 52.1
AUR62040148 Chenopodium quinoa HOM05D001653 ORTHO05D001751 3.3e-06 54.7 48 54.2
Cc00_g26990 Coffea canephora HOM05D001653 ORTHO05D001751 3.3e-06 54.7 46 52.2
SHI04887 Sapria himalayana HOM05D001653 ORTHO05D000023 3.3e-06 54.7 40 60.0
Hma1.2p1_0157F.1_g069000 Hydrangea macrophylla HOM05D001653 ORTHO05D001751 5.5e-06 53.9 39 59.0
Hma1.2p1_1368F.1_g278550 Hydrangea macrophylla HOM05D001653 ORTHO05D001751 5.5e-06 53.9 39 59.0
Sed0024587 Sechium edule HOM05D001653 ORTHO05D001751 7.2e-06 53.5 47 51.1
Sabra01G0172500 Salix brachista HOM05D001653 ORTHO05D001751 9.5e-06 53.1 47 51.1


User provided reference genes

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