Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28484 Trifolium pratense HOM05D001115 ORTHO05D001023 5.6e-33 143.7 71 100.0
TPR.G19180 Trifolium pratense HOM05D001115 ORTHO05D001023 4.7e-32 140.6 71 98.6
Ca_22054_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 7.0e-28 126.7 71 91.5
Medtr4g098860 Medicago truncatula HOM05D001115 ORTHO05D001023 2.7e-27 124.8 71 88.7
Psat4g078280 Pisum sativum HOM05D001115 ORTHO05D001023 4.6e-27 124.0 71 88.7
Glyma.11G041400 Glycine max HOM05D001115 ORTHO05D001023 8.6e-26 119.8 71 81.7
Lj4g0026930 Lotus japonicus HOM05D001115 ORTHO05D001023 1.5e-25 119.0 71 84.5
Lj2g0004413 Lotus japonicus HOM05D001115 ORTHO05D001023 4.3e-25 117.5 70 84.3
Phvul.002G005000 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 4.3e-25 117.5 71 81.7
Lalb_Chr16g0379191 Lupinus albus HOM05D001115 ORTHO05D001023 9.5e-25 116.3 71 80.3
Glyma.17G152900 Glycine max HOM05D001115 ORTHO05D001023 2.8e-24 114.8 71 81.7
Glyma.01G200700 Glycine max HOM05D001115 ORTHO05D001023 3.6e-24 114.4 71 80.3
Lalb_Chr05g0214061 Lupinus albus HOM05D001115 ORTHO05D001023 6.2e-24 113.6 71 77.5
Medtr5g014080 Medicago truncatula HOM05D001115 ORTHO05D001023 8.0e-24 113.2 71 77.5
VMungo1215G3245 Vigna mungo HOM05D001115 ORTHO05D001023 8.0e-24 113.2 71 78.9
arahy.Tifrunner.gnm1.ann1.97VU5P Arachis hypogaea HOM05D001115 ORTHO05D001023 1.8e-23 112.1 71 74.6
arahy.Tifrunner.gnm1.ann1.A6QGA7 Arachis hypogaea HOM05D001115 ORTHO05D001023 1.8e-23 112.1 71 74.6
arahy.Tifrunner.gnm1.ann1.97MI0M Arachis hypogaea HOM05D001115 ORTHO05D001023 2.3e-23 111.7 71 78.9
arahy.Tifrunner.gnm1.ann1.TQ6BSY Arachis hypogaea HOM05D001115 ORTHO05D001023 2.3e-23 111.7 71 78.9
Lalb_Chr16g0386121 Lupinus albus HOM05D001115 ORTHO05D001023 4.0e-23 110.9 71 77.5
ClCG09G012320 Citrullus lanatus HOM05D001115 ORTHO05D001023 6.8e-23 110.2 71 77.5
Nitab4.5_0002055g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 6.8e-23 110.2 72 75.0
Nitab4.5_0005381g0020 Nicotiana tabacum HOM05D001115 ORTHO05D001023 6.8e-23 110.2 72 75.0
VMungo1215G0152 Vigna mungo HOM05D001115 ORTHO05D001023 6.8e-23 110.2 70 77.1
Prupe.5G044200 Prunus persica HOM05D001115 ORTHO05D001023 1.5e-22 109.0 71 74.6
Manes.17G019600 Manihot esculenta HOM05D001115 ORTHO05D001023 2.0e-22 108.6 71 78.9
Manes.15G173750 Manihot esculenta HOM05D001115 ORTHO05D001023 2.6e-22 108.2 71 76.1
Psat2g174040 Pisum sativum HOM05D001115 ORTHO05D001023 2.6e-22 108.2 71 76.1
Sed0014407 Sechium edule HOM05D001115 ORTHO05D001023 4.4e-22 107.5 71 76.1
CsaV3_1G017000 Cucumis sativus L. HOM05D001115 ORTHO05D001023 5.8e-22 107.1 71 74.6
CsaV3_3G049480 Cucumis sativus L. HOM05D001115 ORTHO05D001023 5.8e-22 107.1 71 74.6
Solyc08g077220.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 5.8e-22 107.1 73 75.3
Sopen08g025800 Solanum pennellii HOM05D001115 ORTHO05D001023 5.8e-22 107.1 73 75.3
SGA_v2.0_scaffold20G09234 Striga asiatica HOM05D001115 ORTHO05D001023 7.5e-22 106.7 72 73.6
Rhsim07G0122900 Rhododendron simsii HOM05D001115 ORTHO05D001023 9.8e-22 106.3 72 76.4
SGA_v2.0_scaffold6G03190 Striga asiatica HOM05D001115 ORTHO05D001023 9.8e-22 106.3 72 76.4
Peaxi162Scf00312g00726 Petunia axillaris HOM05D001115 ORTHO05D001023 1.3e-21 105.9 73 74.0
MELO3C003376.2 Cucumis melo HOM05D001115 ORTHO05D001023 2.2e-21 105.1 71 73.2
PGSC0003DMG400024218 Solanum tuberosum HOM05D001115 ORTHO05D001023 2.2e-21 105.1 73 74.0
Phvul.002G004900 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 2.9e-21 104.8 72 75.0
Potri.003G087800 Populus trichocarpa HOM05D001115 ORTHO05D001023 2.9e-21 104.8 71 73.2
MD16G1270100 Malus domestica HOM05D001115 ORTHO05D001023 3.7e-21 104.4 72 72.2
Duzib068G1085 Durio zibethinus HOM05D001115 ORTHO05D001023 4.9e-21 104.0 71 73.2
Sabra03G0057700 Salix brachista HOM05D001115 ORTHO05D001023 4.9e-21 104.0 71 73.2
Oeu019055.1 Olea europaea HOM05D001115 ORTHO05D001023 6.4e-21 103.6 72 72.2
TPR.G8336 Trifolium pratense HOM05D001115 ORTHO05D001023 6.4e-21 103.6 71 71.8
Lj2A245G34 Lonicera japonica HOM05D001115 ORTHO05D001023 8.3e-21 103.2 72 68.1
Potri.001G146100 Populus trichocarpa HOM05D001115 ORTHO05D001023 8.3e-21 103.2 71 71.8
CAN.G799.10 Capsicum annuum HOM05D001115 ORTHO05D001023 1.1e-20 102.8 73 74.0
Duzib205G1909 Durio zibethinus HOM05D001115 ORTHO05D001023 1.4e-20 102.4 71 73.2
Phvul.002G005100 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 1.4e-20 102.4 71 73.2
TWI15G0733 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 1.9e-20 102.1 71 73.2
Gohir.D09G192700 Gossypium hirsutum HOM05D001115 ORTHO05D001023 3.2e-20 101.3 71 71.8
Gorai.004G188200 Gossypium raimondii HOM05D001115 ORTHO05D001023 3.2e-20 101.3 71 71.8
Sc07g0008840 Simmondsia chinensis HOM05D001115 ORTHO05D001023 3.2e-20 101.3 71 69.0
unitig_21.g20541 Utricularia gibba HOM05D001115 ORTHO05D001023 3.2e-20 101.3 72 75.0
Cc08_g02110 Coffea canephora HOM05D001115 ORTHO05D001023 4.1e-20 100.9 72 69.4
MD06G1039300 Malus domestica HOM05D001115 ORTHO05D001023 4.1e-20 100.9 72 72.2
Sed0015720 Sechium edule HOM05D001115 ORTHO05D001023 4.1e-20 100.9 71 71.8
Thecc.03G233500 Theobroma cacao HOM05D001115 ORTHO05D001023 5.4e-20 100.5 71 70.4
MSTRG.27214 Avicennia marina HOM05D001115 ORTHO05D001023 7.0e-20 100.1 72 73.6
COL.COLO4_17103 Corchorus olitorius HOM05D001115 ORTHO05D001023 7.0e-20 100.1 71 69.0
QL12p006905 Quercus lobata HOM05D001115 ORTHO05D001023 7.0e-20 100.1 71 73.2
Sabra01G0114800 Salix brachista HOM05D001115 ORTHO05D001023 7.0e-20 100.1 71 70.4
Rhsim11G0011600 Rhododendron simsii HOM05D001115 ORTHO05D001023 9.2e-20 99.8 72 70.8
TWI60G1661 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 9.2e-20 99.8 71 71.8
TWI81G0776 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 9.2e-20 99.8 71 69.0
Gohir.A08G159300 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.2e-19 99.4 71 70.4
vmacro00348 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 1.2e-19 99.4 72 70.8
Gorai.006G215600 Gossypium raimondii HOM05D001115 ORTHO05D001023 1.6e-19 99.0 71 70.4
SalBow1G5749 Salvia bowleyana HOM05D001115 ORTHO05D001023 1.6e-19 99.0 72 72.2
Gohir.D08G179700 Gossypium hirsutum HOM05D001115 ORTHO05D001023 2.7e-19 98.2 71 69.0
PGR042G3462 Punica granatum HOM05D001115 ORTHO05D001023 2.7e-19 98.2 71 70.4
Dinv28921 Davidia involucrata HOM05D001115 ORTHO05D001023 3.5e-19 97.8 72 70.8
Hma1.2p1_0311F.1_g121330 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 3.5e-19 97.8 72 68.1
unitig_744.g24313 Utricularia gibba HOM05D001115 ORTHO05D001023 4.6e-19 97.4 72 72.2
DCAR_024976 Daucus carota HOM05D001115 ORTHO05D001023 6.0e-19 97.1 71 64.8
Atru.chr6.1767 Acer truncatum HOM05D001115 ORTHO05D001023 7.8e-19 96.7 71 67.6
CANSAT21G2140 Cannabis sativa HOM05D001115 ORTHO05D001023 7.8e-19 96.7 71 69.0
AUR62007237 Chenopodium quinoa HOM05D001115 ORTHO05D001023 7.8e-19 96.7 71 67.6
AUR62018763 Chenopodium quinoa HOM05D001115 ORTHO05D001023 7.8e-19 96.7 71 67.6
Dinv25188 Davidia involucrata HOM05D001115 ORTHO05D001023 7.8e-19 96.7 72 69.4
ECA240G2500 Erigeron canadensis HOM05D001115 ORTHO05D001023 7.8e-19 96.7 70 67.1
VMungo1215G2308 Vigna mungo HOM05D001115 ORTHO05D001023 1.0e-18 96.3 71 69.0
Ca_24636_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 1.3e-18 95.9 71 69.0
Gohir.A09G198100 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.3e-18 95.9 71 69.0
vmacro14150 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 1.3e-18 95.9 72 68.1
EL10Ac5g12184 Beta vulgaris HOM05D001115 ORTHO05D001023 1.7e-18 95.5 71 66.2
CSS0043217 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 1.7e-18 95.5 72 68.1
Actinidia09233 Actinidia chinensis HOM05D001115 ORTHO05D001023 2.3e-18 95.1 73 71.2
CiPaw.11G088100 Carya illinoinensis HOM05D001115 ORTHO05D001023 2.3e-18 95.1 71 69.0
Aqoxy3G02496 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 3.0e-18 94.7 71 66.2
Eucgr.E00307 Eucalyptus grandis HOM05D001115 ORTHO05D001023 3.0e-18 94.7 71 66.2
Migut.E00907 Erythranthe guttata HOM05D001115 ORTHO05D001023 3.9e-18 94.4 72 66.7
SHI07507 Sapria himalayana HOM05D001115 ORTHO05D001023 3.9e-18 94.4 72 69.4
CSS0017524 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 5.1e-18 94.0 72 68.1
CSS0027921 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 5.1e-18 94.0 72 68.1
Hma1.2p1_2066F.1_g313050 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 5.1e-18 94.0 71 64.8
CARHR031820 Cardamine hirsuta HOM05D001115 ORTHO05D001023 6.6e-18 93.6 71 64.8
Cfa012391 Carpinus fangiana HOM05D001115 ORTHO05D001023 6.6e-18 93.6 71 64.8
Duzib084G0778 Durio zibethinus HOM05D001115 ORTHO05D001023 6.6e-18 93.6 71 69.0
ECA246G5071 Erigeron canadensis HOM05D001115 ORTHO05D001023 6.6e-18 93.6 71 63.4
Hma1.2p1_0414F.1_g147790 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 6.6e-18 93.6 73 65.8
THA.LOC104798475 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 6.6e-18 93.6 71 67.6
GSVIVG01013236001 Vitis vinifera HOM05D001115 ORTHO05D001023 6.6e-18 93.6 71 67.6
MSTRG.1968 Avicennia marina HOM05D001115 ORTHO05D001023 8.6e-18 93.2 72 69.4
Nn1g00597 Nelumbo nucifera HOM05D001115 ORTHO05D001023 8.6e-18 93.2 70 68.6
Nn1g00599 Nelumbo nucifera HOM05D001115 ORTHO05D001023 8.6e-18 93.2 70 68.6
Oeu053060.2 Olea europaea HOM05D001115 ORTHO05D001023 8.6e-18 93.2 73 65.8
Sp1g28490 Schrenkiella parvula HOM05D001115 ORTHO05D001023 8.6e-18 93.2 71 66.2
TAR629G2190 Trochodendron aralioides HOM05D001115 ORTHO05D001023 8.6e-18 93.2 71 67.6
Nn6g33650 Nelumbo nucifera HOM05D001115 ORTHO05D001023 1.1e-17 92.8 71 64.8
CiPaw.12G060600 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.5e-17 92.4 71 64.8
MBI04_g13866_MAGBIO Magnolia biondii HOM05D001115 ORTHO05D001023 1.9e-17 92.0 71 67.6
Sc01g0007710 Simmondsia chinensis HOM05D001115 ORTHO05D001023 1.9e-17 92.0 71 64.8
AL1G46590 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 2.5e-17 91.7 71 66.2
DCAR_008296 Daucus carota HOM05D001115 ORTHO05D001023 2.5e-17 91.7 71 64.8
TAR636G1627 Trochodendron aralioides HOM05D001115 ORTHO05D001023 2.5e-17 91.7 71 67.6
Actinidia03391 Actinidia chinensis HOM05D001115 ORTHO05D001023 3.3e-17 91.3 72 68.1
Migut.E00800 Erythranthe guttata HOM05D001115 ORTHO05D001023 3.3e-17 91.3 72 63.9
Migut.E00908 Erythranthe guttata HOM05D001115 ORTHO05D001023 3.3e-17 91.3 72 63.9
Gohir.D12G213100 Gossypium hirsutum HOM05D001115 ORTHO05D001023 3.3e-17 91.3 71 64.8
Gorai.008G228700 Gossypium raimondii HOM05D001115 ORTHO05D001023 3.3e-17 91.3 71 64.8
TAR374G0269 Trochodendron aralioides HOM05D001115 ORTHO05D001023 5.6e-17 90.5 73 65.8
CiPaw.12G060800 Carya illinoinensis HOM05D001115 ORTHO05D001023 7.3e-17 90.1 71 67.6
Actinidia10883 Actinidia chinensis HOM05D001115 ORTHO05D001023 9.5e-17 89.7 72 69.4
AT1G32400 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 9.5e-17 89.7 71 63.4
BcaC05g27862 Brassica carinata HOM05D001115 ORTHO05D001023 9.5e-17 89.7 71 63.4
A05p24880 Brassica napus HOM05D001115 ORTHO05D001023 9.5e-17 89.7 71 63.4
C05p38580 Brassica napus HOM05D001115 ORTHO05D001023 9.5e-17 89.7 71 63.4
BolC5t32596H Brassica oleracea HOM05D001115 ORTHO05D001023 9.5e-17 89.7 71 63.4
BraA05t21375Z Brassica rapa HOM05D001115 ORTHO05D001023 9.5e-17 89.7 71 63.4
Thhalv10008423m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 1.2e-16 89.4 71 64.8
HanXRQChr13g0416631 Helianthus annuus HOM05D001115 ORTHO05D001023 1.2e-16 89.4 71 63.4
Lj8A289G61 Lonicera japonica HOM05D001115 ORTHO05D001023 1.6e-16 89.0 73 64.4
Lsat_1_v5_gn_6_88321 Lactuca sativa HOM05D001115 ORTHO05D001023 2.1e-16 88.6 70 62.9
HPP92_014865 Vanilla planifolia HOM05D001115 ORTHO05D001023 2.1e-16 88.6 71 63.4
BcaB03g13735 Brassica carinata HOM05D001115 ORTHO05D001023 2.8e-16 88.2 72 63.9
Carub.0001s3079 Capsella rubella HOM05D001115 ORTHO05D001023 3.6e-16 87.8 71 63.4
Lsat_1_v5_gn_3_16380 Lactuca sativa HOM05D001115 ORTHO05D001023 3.6e-16 87.8 71 62.0
Actinidia25947 Actinidia chinensis HOM05D001115 ORTHO05D001023 4.7e-16 87.4 72 66.7
Haze_08292 Corylus avellana HOM05D001115 ORTHO05D001023 4.7e-16 87.4 72 66.7
A09p33770 Brassica napus HOM05D001115 ORTHO05D001023 8.1e-16 86.7 71 62.0
C05p31850 Brassica napus HOM05D001115 ORTHO05D001023 8.1e-16 86.7 71 62.0
BolC5t31913H Brassica oleracea HOM05D001115 ORTHO05D001023 8.1e-16 86.7 71 62.0
BraA09t38927Z Brassica rapa HOM05D001115 ORTHO05D001023 8.1e-16 86.7 71 62.0
PSO782G3745 Papaver somniferum HOM05D001115 ORTHO05D001023 8.1e-16 86.7 72 68.1
BcaB07g32924 Brassica carinata HOM05D001115 ORTHO05D001023 1.4e-15 85.9 71 60.6
BcaC05g27277 Brassica carinata HOM05D001115 ORTHO05D001023 1.4e-15 85.9 71 60.6
PSO063G5143 Papaver somniferum HOM05D001115 ORTHO05D001023 1.4e-15 85.9 72 68.1
THA.LOC104812751 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 1.4e-15 85.9 71 63.4
Oeu028034.2 Olea europaea HOM05D001115 ORTHO05D001023 1.8e-15 85.5 73 63.0
Gohir.A12G210400 Gossypium hirsutum HOM05D001115 ORTHO05D001023 3.1e-15 84.7 71 62.0
HanXRQChr03g0085741 Helianthus annuus HOM05D001115 ORTHO05D001023 6.8e-15 83.6 71 59.2
Eucgr.D02156 Eucalyptus grandis HOM05D001115 ORTHO05D001023 8.9e-15 83.2 74 60.8
HanXRQChr06g0167291 Helianthus annuus HOM05D001115 ORTHO05D001023 1.2e-14 82.8 72 61.1
Aa31LG2G13610 Aethionema arabicum HOM05D001115 ORTHO05D001023 4.4e-14 80.9 76 57.9
HPP92_020693 Vanilla planifolia HOM05D001115 ORTHO05D001023 4.4e-14 80.9 72 56.9
Hund14425 Selenicereus undatus HOM05D001115 ORTHO05D001023 7.5e-14 80.1 71 59.2
HPP92_020795 Vanilla planifolia HOM05D001115 ORTHO05D001023 7.5e-14 80.1 72 56.9
PGR031G1994 Punica granatum HOM05D001115 ORTHO05D001023 9.9e-14 79.7 70 58.6
CDE11G1034 Ceratophyllum demersum HOM05D001115 ORTHO05D001023 2.2e-13 78.6 71 56.3
Hund11267 Selenicereus undatus HOM05D001115 ORTHO05D001023 2.2e-13 78.6 72 59.7
CARHR031810 Cardamine hirsuta HOM05D001115 ORTHO05D001023 1.1e-12 76.3 63 60.3
FvH4_5g21300 Fragaria vesca HOM05D001115 ORTHO05D001023 1.4e-12 75.9 71 57.7
FAN04G3256 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.4e-12 75.9 71 57.7
FAN08G1470 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.4e-12 75.9 71 57.7
FAN13G1058 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.4e-12 75.9 71 57.7
FAN18G0875 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.4e-12 75.9 71 57.7
CDE11G0843 Ceratophyllum demersum HOM05D001115 ORTHO05D001023 1.9e-12 75.5 70 55.7
Aa31LG9G15400 Aethionema arabicum HOM05D000044 ORTHO05D000051 3.2e-12 74.7 71 56.3
RcHm_v2.0_Chr7g0208641 Rosa chinensis HOM05D001115 ORTHO05D001023 3.2e-12 74.7 71 57.7
Os08g0282000 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 1.6e-11 72.4 72 55.6
Zm00001eb024230 Zea mays HOM05D001115 ORTHO05D001023 1.6e-11 72.4 73 57.5
ATR0049G063 Amborella trichopoda HOM05D001115 ORTHO05D001023 1.3e-10 69.3 75 57.3
CDE02G4783 Ceratophyllum demersum HOM05D001115 ORTHO05D001023 1.3e-10 69.3 71 50.7
Os08g0159100 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 1.7e-10 68.9 71 54.9
Zm00001eb390640 Zea mays HOM05D001115 ORTHO05D001023 3.9e-10 67.8 73 54.8
HanXRQChr02g0043011 Helianthus annuus HOM05D001115 ORTHO05D001023 1.5e-09 65.9 62 54.8
SEGI_17552 Sequoiadendron giganteum HOM05D001115 ORTHO05D001023 4.3e-09 64.3 68 51.5
Zm00001eb172300 Zea mays HOM05D001115 ORTHO05D001023 1.2e-08 62.8 71 50.7
SEGI_40407 Sequoiadendron giganteum HOM05D001115 ORTHO05D001023 5.2e-07 57.4 73 47.9
Pp3c27_2590 Physcomitrium patens HOM05D001115 ORTHO05D001023 2.6e-06 55.1 68 44.1
HanXRQChr05g0138061 Helianthus annuus HOM05D001115 ORTHO05D001023 4.4e-06 54.3 37 64.9


User provided reference genes

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