Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 4.2e-104 381.3 187 100.0
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 2.8e-52 209.1 148 73.6
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 1.1e-51 207.2 148 74.3
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 7.7e-50 201.1 149 71.1
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 2.9e-41 172.6 148 64.9
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 1.1e-40 170.6 184 54.9
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 1.1e-40 170.6 148 64.2
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 9.5e-40 167.5 148 64.2
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 9.5e-40 167.5 148 64.2
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 6.1e-39 164.9 151 62.3
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 1.5e-37 160.2 148 63.5
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 2.0e-37 159.8 148 63.5
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 2.6e-37 159.5 207 48.3
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 5.9e-34 148.3 140 57.9
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 7.8e-34 147.9 104 69.2
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 1.7e-33 146.7 105 68.6
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.9e-33 145.6 148 54.7
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 5.6e-32 141.7 146 52.7
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 3.6e-31 139.0 153 52.9
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 4.7e-31 138.7 148 54.1
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 4.7e-31 138.7 105 67.6
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 6.2e-31 138.3 122 62.3
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 6.2e-31 138.3 143 54.5
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 1.0e-30 137.5 146 52.7
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 2.3e-30 136.3 105 64.8
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 4.0e-30 135.6 105 61.9
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 3.4e-29 132.5 142 52.1
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 5.8e-29 131.7 107 64.5
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.2e-28 129.8 105 59.0
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.2e-28 129.8 105 59.0
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 2.2e-28 129.8 105 59.0
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 2.9e-28 129.4 106 63.2
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 2.9e-28 129.4 148 51.4
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 4.9e-28 128.6 104 60.6
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 6.4e-28 128.3 131 54.2
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 1.1e-27 127.5 110 57.3
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 1.1e-27 127.5 105 61.9
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 1.1e-27 127.5 104 59.6
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.9e-27 126.7 105 57.1
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 3.2e-27 125.9 105 60.0
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 4.1e-27 125.6 144 52.8
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 5.4e-27 125.2 105 57.1
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.2e-26 124.0 142 51.4
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 3.5e-26 122.5 142 51.4
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 1.0e-25 120.9 105 56.2
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 1.3e-25 120.6 142 50.0
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 1.3e-25 120.6 142 47.2
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 1.7e-25 120.2 140 47.9
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.0e-25 119.4 105 53.3
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 5.0e-25 118.6 106 60.4
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 6.6e-25 118.2 105 52.4
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 1.9e-24 116.7 106 58.5
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.9e-24 116.7 106 58.5
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.9e-24 116.7 106 58.5
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.9e-24 116.7 129 51.2
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 2.5e-24 116.3 102 57.8
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 3.3e-24 115.9 142 45.8
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 5.6e-24 115.2 142 45.1
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 7.3e-24 114.8 142 45.8
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 9.5e-24 114.4 102 56.9
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 9.5e-24 114.4 117 52.1
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 9.5e-24 114.4 105 57.1
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.2e-23 114.0 107 57.9
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 2.1e-23 113.2 142 44.4
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 3.6e-23 112.5 137 46.7
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 3.6e-23 112.5 114 50.9
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 4.7e-23 112.1 103 54.4
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 6.2e-23 111.7 142 45.1
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 8.1e-23 111.3 103 53.4
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 1.1e-22 110.9 124 47.6
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 1.8e-22 110.2 116 50.9
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 4.0e-22 109.0 103 53.4
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 5.2e-22 108.6 143 44.8
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 8.9e-22 107.8 117 53.0
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 8.9e-22 107.8 101 53.5
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 8.9e-22 107.8 116 51.7
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 1.2e-21 107.5 120 52.5
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 2.0e-21 106.7 103 51.5
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 3.4e-21 105.9 81 63.0
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 5.8e-21 105.1 115 48.7
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 5.8e-21 105.1 102 52.0
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 5.8e-21 105.1 97 57.7
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 5.8e-21 105.1 105 52.4
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 7.5e-21 104.8 103 50.5
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 7.5e-21 104.8 105 53.3
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.3e-20 104.0 102 51.0
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 1.3e-20 104.0 107 47.7
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 2.2e-20 103.2 81 61.7
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 2.9e-20 102.8 104 54.8
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 6.4e-20 101.7 117 48.7
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 6.4e-20 101.7 82 62.2
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 2.4e-19 99.8 144 41.7
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 3.2e-19 99.4 104 52.9
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 3.2e-19 99.4 97 52.6
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 4.1e-19 99.0 124 46.0
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 4.1e-19 99.0 110 46.4
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 1.6e-18 97.1 82 57.3
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 2.7e-18 96.3 82 58.5
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 3.5e-18 95.9 91 54.9
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 3.5e-18 95.9 82 53.7
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 7.8e-18 94.7 82 58.5
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 7.8e-18 94.7 79 59.5
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 1.0e-17 94.4 82 61.0
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 1.7e-17 93.6 104 48.1
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 2.3e-17 93.2 91 51.6
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 5.1e-17 92.0 83 51.8
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 6.6e-17 91.7 83 57.8
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 1.1e-16 90.9 100 46.0
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.1e-16 90.9 83 50.6
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 3.3e-16 89.4 82 51.2
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 3.3e-16 89.4 82 51.2
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 7.3e-16 88.2 82 51.2
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 9.5e-16 87.8 82 53.7
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 1.2e-15 87.4 117 42.7
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 2.1e-15 86.7 131 42.7
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 4.7e-15 85.5 92 46.7
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.1e-14 84.3 104 41.3
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.8e-14 83.6 120 41.7
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 1.2e-13 80.9 115 44.3
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 1.2e-13 80.9 39 100.0
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 1.7e-12 77.0 108 39.8
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.7e-12 75.9 58 63.8
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 1.9e-11 73.6 104 40.4
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 9.2e-11 71.2 87 43.7
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.6e-10 70.5 61 52.5
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 2.1e-10 70.1 65 49.2
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 7.8e-10 68.2 82 42.7
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 3.9e-09 65.9 139 31.7
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 5.1e-09 65.5 83 43.4
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 6.2e-07 58.5 92 38.0


User provided reference genes

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