Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 1.8e-69 266.2 171 100.0
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 6.2e-54 214.5 152 75.0
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.3e-35 153.7 167 70.1
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 1.2e-25 120.6 166 58.4
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 7.6e-20 101.3 164 56.1
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 2.7e-17 92.8 150 53.3
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 3.9e-16 89.0 156 46.8
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.9e-16 89.0 152 48.0
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 1.8e-13 80.1 116 53.4
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.8e-13 80.1 153 49.0
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 6.9e-13 78.2 40 90.0
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.5e-12 77.0 137 40.1
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 2.0e-12 76.6 145 42.8
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.0e-12 76.6 39 92.3
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 3.4e-12 75.9 129 42.6
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 4.5e-12 75.5 40 85.0
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 4.5e-12 75.5 40 87.5
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 7.6e-12 74.7 150 40.7
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.0e-11 74.3 128 43.8
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 1.3e-11 73.9 39 87.2
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 1.7e-11 73.6 127 40.2
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.7e-11 73.6 117 44.4
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 2.2e-11 73.2 78 52.6
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.9e-11 72.8 128 43.0
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 3.8e-11 72.4 94 46.8
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 6.5e-11 71.6 132 37.1
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 6.5e-11 71.6 39 82.1
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 8.4e-11 71.2 195 35.4
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.1e-10 70.9 128 42.2
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.1e-10 70.9 39 87.2
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 1.1e-10 70.9 39 82.1
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 1.4e-10 70.5 86 47.7
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.9e-10 70.1 40 82.5
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 3.2e-10 69.3 39 82.1
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 3.2e-10 69.3 39 84.6
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 3.2e-10 69.3 38 84.2
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.2e-10 69.3 38 81.6
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.5e-10 68.6 39 82.1
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 9.3e-10 67.8 39 79.5
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 9.3e-10 67.8 167 35.9
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 9.3e-10 67.8 117 44.4
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.2e-09 67.4 159 35.2
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.2e-09 67.4 76 48.7
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.2e-09 67.4 39 76.9
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 1.2e-09 67.4 39 76.9
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.6e-09 67.0 38 81.6
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 2.7e-09 66.2 38 81.6
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.7e-09 66.2 125 40.0
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.5e-09 65.9 38 78.9
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 3.5e-09 65.9 38 78.9
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 3.5e-09 65.9 34 88.2
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 3.5e-09 65.9 102 45.1
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.5e-09 65.9 102 45.1
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 4.6e-09 65.5 40 80.0
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 6.1e-09 65.1 35 82.9
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 6.1e-09 65.1 77 66.2
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 1.0e-08 64.3 38 76.3
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.0e-08 64.3 38 76.3
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.0e-08 64.3 38 76.3
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.0e-08 64.3 38 76.3
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.0e-08 64.3 118 42.4
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 1.3e-08 63.9 38 76.3
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 1.3e-08 63.9 38 76.3
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 1.8e-08 63.5 38 81.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.3e-08 63.2 39 71.8
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 2.3e-08 63.2 43 72.1
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 3.0e-08 62.8 38 78.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 3.0e-08 62.8 146 38.4
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 5.1e-08 62.0 38 76.3
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 5.1e-08 62.0 163 31.3
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 6.7e-08 61.6 35 80.0
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 8.7e-08 61.2 42 73.8
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 8.7e-08 61.2 38 71.1
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.1e-07 60.8 131 35.9
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.5e-07 60.5 33 81.8
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.5e-07 60.5 160 36.2
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.9e-07 60.1 149 36.9
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 1.9e-07 60.1 39 74.4
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.9e-07 60.1 39 74.4
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 2.5e-07 59.7 174 32.8
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.5e-07 59.7 38 76.3
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 2.5e-07 59.7 33 81.8
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 3.3e-07 59.3 39 74.4
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 3.3e-07 59.3 197 36.0
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 3.3e-07 59.3 39 71.8
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 5.7e-07 58.5 143 35.0
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 7.4e-07 58.2 123 41.5
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 7.4e-07 58.2 36 75.0
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 9.7e-07 57.8 37 67.6
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 9.7e-07 57.8 167 31.1
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.6e-06 57.0 133 36.8
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 2.8e-06 56.2 38 65.8
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 2.8e-06 56.2 153 35.9
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 6.3e-06 55.1 36 66.7


User provided reference genes

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