Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.0e-114 416.8 208 100.0
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 3.6e-88 328.6 203 84.2
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 5.2e-79 298.1 202 76.2
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 5.7e-78 294.7 203 74.9
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 2.6e-70 269.2 202 70.3
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 9.5e-65 250.8 202 65.3
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 2.8e-64 249.2 202 64.4
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 2.6e-62 242.7 202 63.4
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 2.0e-59 233.0 202 60.9
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 2.9e-58 229.2 201 63.2
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 3.8e-58 228.8 201 62.7
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.9e-41 173.3 202 45.5
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.2e-40 170.6 201 52.2
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 1.4e-39 167.2 203 44.3
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 2.3e-39 166.4 202 41.6
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 3.1e-39 166.0 203 44.3
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 1.2e-38 164.1 204 44.1
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 5.8e-38 161.8 203 42.9
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 7.5e-38 161.4 202 40.6
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 1.7e-37 160.2 205 44.9
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 6.4e-37 158.3 205 43.9
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 8.3e-37 157.9 203 40.4
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 9.2e-36 154.5 203 41.9
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 1.6e-35 153.7 207 39.6
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 2.1e-35 153.3 203 42.9
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.1e-35 153.3 201 39.8
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.5e-35 152.5 202 43.1
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 6.0e-35 151.8 202 40.1
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.0e-34 151.0 197 44.2
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 1.3e-34 150.6 207 38.6
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.3e-34 150.6 204 39.2
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 3.9e-34 149.1 203 38.9
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 3.9e-34 149.1 202 39.6
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.9e-34 149.1 202 39.6
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 1.5e-33 147.1 202 38.6
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 1.9e-33 146.7 203 39.4
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 1.9e-33 146.7 203 38.4
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 2.5e-33 146.4 203 37.4
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 5.6e-33 145.2 205 40.0
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 5.6e-33 145.2 203 41.4
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 7.3e-33 144.8 202 38.6
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 9.5e-33 144.4 202 39.6
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 2.1e-32 143.3 211 36.0
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.8e-32 142.9 203 41.4
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 2.8e-32 142.9 203 38.9
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 3.6e-32 142.5 205 36.6
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 4.7e-32 142.1 205 40.5
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 4.7e-32 142.1 204 39.7
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 1.4e-31 140.6 205 36.6
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.4e-31 140.6 202 40.6
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 3.1e-31 139.4 205 36.6
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 4.0e-31 139.0 203 38.9
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.6e-30 136.3 203 38.4
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 3.4e-30 136.0 202 39.1
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 7.6e-30 134.8 203 37.9
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 9.9e-30 134.4 203 38.4
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 1.3e-29 134.0 203 37.4
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.3e-29 134.0 205 40.0
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 2.2e-29 133.3 203 35.0
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 3.8e-29 132.5 203 34.0
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.9e-29 132.1 203 37.4
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 8.4e-29 131.3 203 36.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 1.4e-28 130.6 203 36.9
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 3.2e-28 129.4 203 36.0
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.2e-27 127.5 202 35.6
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 1.6e-27 127.1 205 33.2
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 1.6e-27 127.1 203 36.9
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 7.8e-27 124.8 204 36.3
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.3e-26 124.0 203 36.5
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.3e-26 124.0 203 36.5
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.7e-26 123.6 203 36.0
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 2.3e-26 123.2 203 36.5
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 3.0e-26 122.9 150 44.7
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 3.9e-26 122.5 203 35.5
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 3.9e-26 122.5 203 35.5
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 6.6e-26 121.7 205 34.6
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 8.1e-24 114.8 202 35.1
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 1.8e-23 113.6 157 40.1
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 2.4e-23 113.2 212 32.1
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 4.0e-23 112.5 212 32.1
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 6.9e-23 111.7 212 31.6
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 1.5e-22 110.5 208 33.2
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 4.4e-22 109.0 210 32.4
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 4.4e-22 109.0 191 37.2
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 1.3e-21 107.5 203 33.0
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 7.1e-20 101.7 203 29.6
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 3.5e-19 99.4 203 28.1
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 3.5e-19 99.4 175 34.9
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 7.8e-19 98.2 163 35.0
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.0e-18 97.8 187 34.2
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 2.3e-18 96.7 201 30.3
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 8.7e-18 94.7 203 30.0
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.0e-15 85.9 133 36.1
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 4.0e-15 85.9 206 30.6
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 1.5e-14 84.0 212 28.8
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 2.0e-14 83.6 207 30.0
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 4.5e-14 82.4 202 29.2
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.5e-06 55.8 44 56.8


User provided reference genes

Program Settings