Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 4.3e-104 381.3 192 100.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.1e-97 357.8 194 95.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 6.9e-94 347.4 193 91.2
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.9e-92 341.3 194 89.2
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.4e-91 339.7 193 90.2
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.5e-88 329.7 193 86.5
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.3e-88 328.6 192 82.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 4.3e-88 328.2 193 86.5
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.3e-88 327.4 194 84.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.6e-87 326.2 192 84.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.1e-87 325.9 192 85.9
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.8e-87 325.5 193 85.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.6e-87 325.1 194 83.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.8e-87 324.7 198 83.3
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 6.2e-87 324.3 194 85.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.2e-87 324.3 194 85.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 8.1e-87 323.9 193 85.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.1e-87 323.9 194 85.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.1e-87 323.9 192 83.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.1e-86 323.6 192 83.9
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.1e-86 323.6 198 85.4
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.1e-86 323.6 192 84.9
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.3e-86 321.2 197 83.2
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.9e-86 320.9 197 83.2
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.5e-85 319.7 192 83.9
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 84.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.0e-85 319.3 192 83.9
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.4e-85 318.5 196 83.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 7.6e-85 317.4 192 83.9
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 7.6e-85 317.4 192 83.3
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 9.9e-85 317.0 192 83.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.2e-84 315.8 193 82.4
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 3.8e-84 315.1 192 83.3
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 3.8e-84 315.1 194 82.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 6.4e-84 314.3 192 80.7
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.4e-84 313.9 195 82.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.1e-83 313.5 192 80.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 200 78.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 200 78.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 192 82.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.9e-83 312.8 200 79.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.4e-83 312.4 201 77.1
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.2e-83 312.0 194 82.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.2e-83 312.0 194 82.0
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 193 82.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 4.2e-83 311.6 194 81.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 5.4e-83 311.2 195 82.1
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 7.1e-83 310.8 194 81.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 9.3e-83 310.5 200 77.5
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.2e-82 310.1 193 81.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-82 310.1 196 80.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.2e-82 310.1 198 78.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.6e-82 309.7 192 80.7
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.6e-82 309.7 192 80.7
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.1e-82 309.3 192 80.7
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.7e-82 308.9 201 78.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.7e-82 308.9 196 81.6
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 194 79.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 197 78.2
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.5e-82 308.5 200 77.5
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 4.6e-82 308.1 194 82.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.6e-82 308.1 203 75.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 6.0e-82 307.8 194 82.5
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.9e-82 307.4 197 78.2
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.0e-81 307.0 199 78.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.0e-81 307.0 199 78.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 192 79.2
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.3e-81 306.6 199 78.4
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-81 306.2 199 78.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.8e-81 306.2 192 79.2
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.3e-81 305.8 192 79.2
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.9e-81 305.1 199 78.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.9e-81 305.1 199 78.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.1e-81 304.7 202 78.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 5.1e-81 304.7 199 78.4
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 6.7e-81 304.3 192 80.2
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 6.7e-81 304.3 192 78.6
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 8.7e-81 303.9 198 76.8
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 8.7e-81 303.9 195 78.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 8.7e-81 303.9 201 76.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-80 303.5 199 77.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.1e-80 303.5 193 78.2
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.5e-80 303.1 203 75.9
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 206 77.2
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-80 302.8 198 78.8
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.9e-80 302.8 198 78.8
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 77.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 77.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-80 302.8 201 74.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.5e-80 302.4 204 74.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.3e-80 302.0 198 78.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 4.3e-80 301.6 197 78.7
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 4.3e-80 301.6 193 78.8
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 4.3e-80 301.6 192 79.2
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 7.4e-80 300.8 192 78.1
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 9.6e-80 300.4 196 74.5
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.1e-79 299.3 199 75.9
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 4.8e-79 298.1 192 76.6
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 8.1e-79 297.4 199 77.9
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.1e-78 297.0 191 76.4
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-78 297.0 208 73.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.4e-78 295.8 200 74.5
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.1e-78 295.4 233 70.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 4.0e-78 295.0 198 76.3
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 6.9e-78 294.3 198 75.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.0e-78 293.9 201 74.1
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.2e-77 293.5 174 83.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.2e-77 293.5 199 75.4
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.0e-77 292.7 192 77.6
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.6e-77 292.4 201 75.6
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.4e-77 292.0 199 77.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 7.6e-77 290.8 202 73.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 9.9e-77 290.4 193 76.2
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.3e-76 290.0 173 82.7
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.2e-76 289.3 201 75.1
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.9e-76 288.9 241 65.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.8e-76 288.5 215 69.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.4e-75 285.8 182 81.3
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.4e-75 285.8 186 78.0
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 4.2e-75 285.0 211 71.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 5.5e-75 284.6 192 76.6
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 7.9e-74 280.8 182 76.4
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 6.7e-73 277.7 187 74.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 6.7e-73 277.7 223 66.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.7e-73 277.3 175 81.1
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.5e-72 276.6 192 70.3
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-71 273.5 197 68.5
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 3.7e-71 271.9 180 78.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 8.2e-71 270.8 192 71.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 5.3e-70 268.1 213 68.1
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 5.3e-70 268.1 196 67.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.0e-69 266.2 201 70.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 9.3e-67 257.3 207 68.1
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.3e-65 253.4 183 68.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.3e-65 253.4 185 68.1
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.8e-65 253.1 213 63.8
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.3e-65 252.7 198 63.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 3.9e-65 251.9 196 67.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-63 246.9 192 67.7
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.8e-63 245.7 182 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.2e-61 240.4 176 67.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.9e-60 235.7 178 70.2
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.3e-56 222.2 201 60.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 5.3e-54 214.9 153 70.6
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.4e-49 200.3 119 86.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.4e-46 190.3 116 81.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 5.9e-45 184.9 176 59.1
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.0e-41 172.6 99 88.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 8.8e-41 171.0 99 87.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.3e-40 169.1 98 88.8
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 4.1e-38 162.2 189 57.1
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.2e-35 151.4 97 73.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 4.1e-30 135.6 195 48.2
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 5.3e-30 135.2 97 75.3
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.5e-29 132.5 100 70.0
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.0e-28 131.0 70 92.9
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.7e-28 130.2 80 76.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.8e-25 118.2 78 66.7
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.0e-24 116.7 188 39.9
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 2.6e-24 116.3 193 39.4
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-21 107.1 100 64.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 6.6e-20 101.7 192 40.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 9.5e-19 97.8 72 68.1
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 4.7e-18 95.5 192 39.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 4.7e-18 95.5 72 61.1
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-15 87.4 62 67.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.1e-14 84.3 64 65.6
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.1e-14 84.3 166 35.5
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.0e-14 81.6 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.2e-14 81.3 53 77.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.3e-12 77.4 59 67.8
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.8e-10 69.7 72 55.6


User provided reference genes

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