Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 1.5e-90 336.3 177 100.0
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 2.3e-59 232.6 175 69.7
TPR.G32889 Trifolium pratense HOM05D007995 ORTHO05D001819 1.8e-56 223.0 175 68.6
Psat1g086800 Pisum sativum HOM05D007995 ORTHO05D001819 6.2e-49 198.0 177 59.9
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 7.6e-47 191.0 177 58.2
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 6.4e-46 188.0 174 58.0
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.7e-43 179.9 178 55.1
Medtr6g024040 Medicago truncatula HOM05D007995 ORTHO05D001819 4.4e-39 165.2 185 51.9
Medtr6g024035 Medicago truncatula HOM05D007995 ORTHO05D001819 7.1e-37 157.9 175 52.6
Psat3g149840 Pisum sativum HOM05D007995 ORTHO05D001819 1.7e-35 153.3 175 53.7
Medtr6g024020 Medicago truncatula HOM05D007995 ORTHO05D001819 2.5e-34 149.4 176 50.6
Ca_31166_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.6e-33 146.7 156 53.8
Lalb_Chr04g0256671 Lupinus albus HOM05D007995 ORTHO05D001819 1.7e-30 136.7 176 43.8
Lalb_Chr14g0367641 Lupinus albus HOM05D007995 ORTHO05D001819 3.8e-30 135.6 176 43.2
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 1.9e-29 133.3 174 46.0
Lalb_Chr16g0386221 Lupinus albus HOM05D007995 ORTHO05D001819 1.9e-29 133.3 179 43.6
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 2.4e-29 132.9 174 46.0
Lalb_Chr16g0386201 Lupinus albus HOM05D007995 ORTHO05D001819 3.2e-29 132.5 179 43.0
Lalb_Chr16g0386271 Lupinus albus HOM05D007995 ORTHO05D001819 1.2e-28 130.6 172 43.0
TPR.G30442 Trifolium pratense HOM05D007995 ORTHO05D001819 2.7e-28 129.4 177 45.2
Lj3g0018744 Lotus japonicus HOM05D007995 ORTHO05D001819 4.6e-28 128.6 177 41.8
Medtr6g023905 Medicago truncatula HOM05D007995 ORTHO05D001819 6.0e-28 128.3 174 43.7
TPR.G33129 Trifolium pratense HOM05D007995 ORTHO05D001819 1.3e-27 127.1 178 46.1
Lalb_Chr16g0386301 Lupinus albus HOM05D007995 ORTHO05D001819 2.3e-27 126.3 175 41.1
TPR.G30439 Trifolium pratense HOM05D007995 ORTHO05D001819 5.1e-27 125.2 175 42.9
TPR.G16188 Trifolium pratense HOM05D007995 ORTHO05D001819 1.1e-26 124.0 173 43.4
TPR.G36428 Trifolium pratense HOM05D007995 ORTHO05D001819 7.4e-26 121.3 171 43.3
Lalb_Chr22g0356001 Lupinus albus HOM05D007995 ORTHO05D001819 2.8e-25 119.4 154 43.5
Ca_14013_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 4.0e-24 115.5 172 40.1
Medtr6g023995 Medicago truncatula HOM05D007995 ORTHO05D001819 1.2e-23 114.0 153 43.8
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 1.2e-23 114.0 175 39.4
Phvul.007G271650 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 2.0e-23 113.2 175 41.1
Lalb_Chr22g0356081 Lupinus albus HOM05D007995 ORTHO05D001819 1.0e-22 110.9 175 38.3
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 1.0e-22 110.9 172 39.5
Lalb_Chr16g0386251 Lupinus albus HOM05D007995 ORTHO05D001819 1.7e-22 110.2 168 40.5
arahy.Tifrunner.gnm1.ann1.8T8NTE Arachis hypogaea HOM05D007995 ORTHO05D001819 2.9e-22 109.4 185 38.9
Ca_28343_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 3.8e-22 109.0 176 40.9
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 1.4e-21 107.1 177 40.1
Medtr5g095680 Medicago truncatula HOM05D007995 ORTHO05D001819 1.9e-21 106.7 176 42.6
Medtr6g024185 Medicago truncatula HOM05D007995 ORTHO05D001819 2.5e-21 106.3 170 38.2
Ca_31346_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 4.2e-21 105.5 172 38.4
Ca_31352_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 4.2e-21 105.5 172 37.2
Psat1g140040 Pisum sativum HOM05D007995 ORTHO05D001819 7.1e-21 104.8 166 37.3
Ca_30953_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.2e-20 104.0 172 37.8
Lalb_Chr14g0366281 Lupinus albus HOM05D007995 ORTHO05D001819 1.2e-20 104.0 173 35.8
Psat1g087920 Pisum sativum HOM05D007995 ORTHO05D001819 1.2e-20 104.0 176 40.3
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 1.8e-19 100.1 176 37.5
Ca_17116_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 3.0e-19 99.4 178 37.1
Lalb_Chr16g0386281 Lupinus albus HOM05D007995 ORTHO05D001819 1.5e-18 97.1 120 45.0
Medtr6g024180 Medicago truncatula HOM05D007995 ORTHO05D001819 1.5e-18 97.1 174 35.1
TPR.G22073 Trifolium pratense HOM05D007995 ORTHO05D001819 2.5e-18 96.3 175 37.7
Lalb_Chr14g0366261 Lupinus albus HOM05D007995 ORTHO05D001819 4.3e-18 95.5 173 35.8
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 2.1e-17 93.2 170 35.3
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.7e-17 92.4 170 34.7
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.1e-16 90.9 169 32.5
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-16 90.5 168 31.5
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.4e-16 89.7 169 32.5
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.4e-16 89.7 169 32.5
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.4e-16 89.7 167 33.5
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.4e-16 89.7 167 33.5
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-16 89.4 169 33.1
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.1e-16 89.0 169 36.1
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.1e-16 89.0 169 33.1
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 4.1e-16 89.0 158 34.8
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.0e-16 87.8 169 32.0
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.2e-15 87.4 179 31.8
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-15 86.7 169 30.8
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 2.6e-15 86.3 168 32.7
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.4e-15 85.9 169 32.0
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.5e-15 85.5 169 31.4
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.8e-15 85.1 167 32.3
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.8e-15 85.1 170 34.1
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-14 84.3 169 30.2
Medtr6g023895 Medicago truncatula HOM05D007995 ORTHO05D001819 1.0e-14 84.3 82 54.9
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-14 84.0 166 31.9
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.7e-14 83.6 167 32.3
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-14 83.6 163 31.3
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-14 83.6 163 31.3
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-14 83.6 163 31.3
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-14 83.6 163 31.3
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-14 83.6 163 31.3
Ca_28472_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 2.2e-14 83.2 78 56.4
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-14 83.2 163 31.3
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-14 83.2 163 31.3
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-14 83.2 163 31.3
Ca_26896_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 2.9e-14 82.8 156 34.6
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 169 29.6
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 163 32.5
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 169 31.4
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 2.9e-14 82.8 170 34.7
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.8e-14 82.4 169 30.2
Medtr6g024050 Medicago truncatula HOM05D007995 ORTHO05D001819 6.5e-14 81.6 175 36.6
Medtr6g024060 Medicago truncatula HOM05D007995 ORTHO05D001819 6.5e-14 81.6 174 36.2
Medtr6g024075 Medicago truncatula HOM05D007995 ORTHO05D001819 6.5e-14 81.6 174 36.2
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-13 80.5 167 31.7
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-13 80.1 167 32.3
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.9e-13 80.1 173 35.3
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-13 79.7 172 32.6
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 2.5e-13 79.7 177 35.0
TPR.G18497 Trifolium pratense HOM05D007995 ORTHO05D001819 2.5e-13 79.7 114 38.6
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-13 79.3 146 32.2
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-13 79.3 181 32.0
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.2e-13 79.0 156 32.7
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.2e-13 79.0 172 32.6
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.5e-13 78.6 167 31.7
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 5.5e-13 78.6 171 33.9
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.2e-13 78.2 177 31.6
Medtr6g024085 Medicago truncatula HOM05D007995 ORTHO05D001819 7.2e-13 78.2 175 36.6
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 9.3e-13 77.8 158 32.3
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.2e-12 77.4 169 29.6
Lalb_Chr14g0366251 Lupinus albus HOM05D007995 ORTHO05D001819 1.2e-12 77.4 171 29.2
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.2e-12 77.4 171 33.9
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-12 76.6 166 30.1
Medtr6g024195 Medicago truncatula HOM05D007995 ORTHO05D001819 2.1e-12 76.6 169 36.7
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 2.7e-12 76.3 172 32.0
Medtr0155s0080 Medicago truncatula HOM05D007995 ORTHO05D001819 2.7e-12 76.3 176 38.1
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.5e-12 75.9 173 34.7
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 4.6e-12 75.5 171 31.0
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 4.6e-12 75.5 172 32.0
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 7.9e-12 74.7 171 29.8
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.0e-11 74.3 171 31.0
Lalb_Chr14g0366241 Lupinus albus HOM05D007995 ORTHO05D001819 1.0e-11 74.3 86 46.5
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-11 73.6 169 28.4
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.8e-11 73.6 171 32.2
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.3e-11 73.2 169 28.4
Medtr6g024170 Medicago truncatula HOM05D007995 ORTHO05D001819 2.3e-11 73.2 180 34.4
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.3e-11 73.2 173 31.8
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 3.0e-11 72.8 175 31.4
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 3.0e-11 72.8 175 31.4
Medtr0155s0060 Medicago truncatula HOM05D007995 ORTHO05D001819 3.9e-11 72.4 187 34.2
Medtr6g025520 Medicago truncatula HOM05D007995 ORTHO05D001819 3.9e-11 72.4 174 34.5
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 5.1e-11 72.0 159 33.3
ClCG07G004740 Citrullus lanatus HOM05D003146 ORTHO05D001819 5.1e-11 72.0 169 28.4
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.7e-11 71.2 137 31.4
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.1e-10 70.9 162 32.1
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 3.3e-10 69.3 172 28.5
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.3e-10 69.3 137 30.7
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 7.4e-10 68.2 173 28.9
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-09 67.0 125 33.6
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 4.8e-09 65.5 179 29.6
Medtr4g031690 Medicago truncatula HOM05D007995 ORTHO05D001819 6.3e-09 65.1 140 35.0
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 1.1e-08 64.3 171 28.1
arahy.Tifrunner.gnm1.ann1.I3WRP4 Arachis hypogaea HOM05D007995 ORTHO05D001819 1.1e-08 64.3 139 32.4
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-08 63.9 122 33.6
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.8e-08 63.5 174 27.6
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.8e-08 63.5 174 27.6
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.8e-08 63.5 174 27.6
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.8e-08 63.5 174 27.6
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 1.8e-08 63.5 171 28.7
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 2.4e-08 63.2 171 28.7
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.1e-08 62.8 100 33.0
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.1e-08 62.8 100 33.0
Sed0025474 Sechium edule HOM05D003146 ORTHO05D001819 3.1e-08 62.8 166 25.3
MD16G1147400 Malus domestica HOM05D003146 ORTHO05D001819 4.1e-08 62.4 141 33.3
CsaV3_6G020170 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.3e-08 62.0 131 29.0
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 9.0e-08 61.2 160 27.5
Lj1g0000753 Lotus japonicus HOM05D003146 ORTHO05D001819 9.0e-08 61.2 172 28.5
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 9.0e-08 61.2 149 26.2
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 4.5e-07 58.9 154 26.6
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 5.9e-07 58.5 141 31.2
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 5.9e-07 58.5 141 31.2
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 5.9e-07 58.5 141 31.2
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 7.7e-07 58.2 175 26.9
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 7.7e-07 58.2 175 24.6
Medtr6g025560 Medicago truncatula HOM05D007995 ORTHO05D001819 1.0e-06 57.8 172 30.2
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 1.0e-06 57.8 172 27.3
ClCG06G000830 Citrullus lanatus HOM05D001445 ORTHO05D001261 1.7e-06 57.0 154 29.2
THA.LOC104825839 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 2.9e-06 56.2 174 29.9
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 3.8e-06 55.8 155 25.2
Medtr6g025580 Medicago truncatula HOM05D007995 ORTHO05D001819 5.0e-06 55.5 173 31.2
Sed0025882 Sechium edule HOM05D001445 ORTHO05D001261 6.5e-06 55.1 177 27.1
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.5e-06 54.7 89 33.7


User provided reference genes

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