Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28262 Trifolium pratense HOM05D002965 ORTHO05D010536 8.1e-129 463.8 237 100.0
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 1.2e-47 194.1 169 65.1
Aa31csc464G20 Aethionema arabicum HOM05D000743 ORTHO05D000580 1.5e-29 134.0 147 55.8
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 2.3e-27 126.7 186 44.6
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 2.3e-27 126.7 186 44.6
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 4.1e-24 115.9 240 37.9
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 4.1e-24 115.9 240 37.9
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 2.3e-22 110.2 257 36.2
Lj6A7T8 Lonicera japonica HOM05D002965 ORTHO05D010536 5.1e-22 109.0 183 39.9
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 5.1e-22 109.0 162 45.1
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 5.1e-22 109.0 162 45.1
Glyma.17G186200 Glycine max HOM05D002965 ORTHO05D010536 8.6e-22 108.2 125 48.0
Solyc06g074585.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.1e-21 107.8 162 45.1
PGR028G0005 Punica granatum HOM05D002965 ORTHO05D010536 1.9e-21 107.1 123 51.2
PGR069G0002 Punica granatum HOM05D002965 ORTHO05D010536 1.9e-21 107.1 123 51.2
PGR069G0012 Punica granatum HOM05D002965 ORTHO05D010536 1.9e-21 107.1 123 51.2
PGR069G0018 Punica granatum HOM05D002965 ORTHO05D010536 1.9e-21 107.1 123 51.2
PGR071G0002 Punica granatum HOM05D002965 ORTHO05D010536 1.9e-21 107.1 123 51.2
PGSC0003DMG400010573 Solanum tuberosum HOM05D002965 ORTHO05D010536 4.3e-21 105.9 162 44.4
SabraMtG0009900 Salix brachista HOM05D002965 ORTHO05D010536 2.1e-20 103.6 107 51.4
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 2.1e-20 103.6 157 43.9
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 2.1e-20 103.6 157 43.9
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 2.8e-20 103.2 149 42.3
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 2.8e-20 103.2 149 42.3
Solyc00g500114.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 3.6e-20 102.8 158 43.7
Psat0s7112g0120 Pisum sativum HOM05D002965 ORTHO05D010536 4.7e-20 102.4 82 62.2
arahy.Tifrunner.gnm1.ann1.LH5L6M Arachis hypogaea HOM05D002965 ORTHO05D010536 1.1e-19 101.3 95 52.6
HanXRQMTg0579151 Helianthus annuus HOM05D002965 ORTHO05D010536 3.1e-19 99.8 165 39.4
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 6.8e-19 98.6 208 36.1
CARHR283260 Cardamine hirsuta HOM05D002965 ORTHO05D010536 1.2e-18 97.8 114 47.4
ECA039G0005 Erigeron canadensis HOM05D002965 ORTHO05D010536 1.2e-18 97.8 156 41.0
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 2.0e-18 97.1 111 45.0
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 2.0e-18 97.1 156 41.0
ATMG01010 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 2.6e-18 96.7 114 46.5
Aqoxy3G01134 Aquilegia oxysepala HOM05D002965 ORTHO05D010536 7.6e-18 95.1 184 37.5
ECA003G0005 Erigeron canadensis HOM05D002965 ORTHO05D000580 1.3e-17 94.4 204 35.8
HanXRQChr07g0188971 Helianthus annuus HOM05D002965 ORTHO05D010536 2.9e-17 93.2 117 46.2
Gorai.013G137600 Gossypium raimondii HOM05D002965 ORTHO05D010536 1.1e-16 91.3 108 50.0
Eucgr.I01860 Eucalyptus grandis HOM05D002965 ORTHO05D010536 1.9e-16 90.5 166 35.5
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 4.6e-15 85.9 147 38.1
Hma1.2p1_0290F.1_g114710 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 4.6e-15 85.9 224 35.7
Hma1.2p1_0290F.1_g114715 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 4.6e-15 85.9 224 35.7
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 6.6e-14 82.0 70 57.1
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-13 80.9 149 38.3
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-13 80.9 80 52.5
Gohir.D06G053851 Gossypium hirsutum HOM05D002965 ORTHO05D010536 1.1e-11 74.7 79 50.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 2.4e-11 73.6 68 57.4
Potri.007G062262 Populus trichocarpa HOM05D002965 ORTHO05D010536 2.4e-11 73.6 57 61.4
HanXRQChr07g0188961 Helianthus annuus HOM05D002965 ORTHO05D010536 9.0e-11 71.6 69 52.2
Solyc11g045430.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 5.8e-10 68.9 79 45.6
HanXRQChr07g0189021 Helianthus annuus HOM05D002965 ORTHO05D010536 7.6e-10 68.6 62 54.8
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.7e-09 67.4 47 63.8
BcaC05g26887 Brassica carinata HOM05D002965 ORTHO05D010536 8.4e-09 65.1 67 53.7
BraSC77t46663Z Brassica rapa HOM05D002965 ORTHO05D010536 1.4e-08 64.3 60 55.0
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 1.9e-08 63.9 75 45.3
VMungo0251G1451 Vigna mungo HOM05D002965 ORTHO05D010536 1.9e-08 63.9 76 47.4
arahy.Tifrunner.gnm1.ann1.S21A07 Arachis hypogaea HOM05D008923 ORTHO05D011423 4.2e-08 62.8 67 49.3
EL10Ac5g12181 Beta vulgaris HOM05D002965 ORTHO05D010536 1.2e-07 61.2 60 50.0
CAN.G362.38 Capsicum annuum HOM05D002965 ORTHO05D010994 2.7e-07 60.1 54 51.9
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 6.0e-07 58.9 77 46.8
HanXRQChr10g0297161 Helianthus annuus HOM05D002965 ORTHO05D010536 1.3e-06 57.8 81 42.0
PGSC0003DMG400040498 Solanum tuberosum HOM05D002965 ORTHO05D010514 1.3e-06 57.8 107 41.1
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 3.9e-06 56.2 56 51.8
HanXRQChr02g0035251 Helianthus annuus HOM05D002965 ORTHO05D010536 3.9e-06 56.2 63 47.6
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 3.9e-06 56.2 82 42.7
Aa31csc1081G40 Aethionema arabicum HOM05D002965 ORTHO05D010536 5.1e-06 55.8 61 42.6


User provided reference genes

Program Settings