Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28258 Trifolium pratense HOM05D003117 ORTHO05D003612 7.0e-47 190.3 96 100.0
TPR.G39892 Trifolium pratense HOM05D003117 ORTHO05D003612 3.8e-45 184.5 96 96.9
Psat6g102200 Pisum sativum HOM05D003117 ORTHO05D003612 1.6e-35 152.5 89 86.5
Glyma.10G001000 Glycine max HOM05D003117 ORTHO05D003612 3.6e-35 151.4 89 85.4
Medtr5g042410 Medicago truncatula HOM05D003117 ORTHO05D003612 1.0e-34 149.8 89 85.4
Lalb_Chr03g0037941 Lupinus albus HOM05D003117 ORTHO05D003612 4.0e-34 147.9 85 87.1
VMungo0720G0109 Vigna mungo HOM05D003117 ORTHO05D003612 8.9e-34 146.7 89 83.1
Phvul.007G280000 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 1.2e-33 146.4 89 83.1
Glyma.10G001100 Glycine max HOM05D003117 ORTHO05D003612 2.2e-32 142.1 89 80.9
Lj6g0000554 Lotus japonicus HOM05D003117 ORTHO05D003612 2.9e-32 141.7 89 78.7
Lalb_Chr03g0037631 Lupinus albus HOM05D003117 ORTHO05D003612 3.7e-32 141.4 82 85.4
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 4.9e-32 141.0 95 76.8
Ca_12210_v3 Cicer arietinum L. HOM05D003117 ORTHO05D003612 6.4e-32 140.6 89 78.7
Medtr5g042400 Medicago truncatula HOM05D003117 ORTHO05D003612 6.4e-32 140.6 89 79.8
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 8.3e-32 140.2 95 76.8
Lalb_Chr01g0020821 Lupinus albus HOM05D003117 ORTHO05D003612 1.4e-31 139.4 89 79.8
VMungo0720G0420 Vigna mungo HOM05D003117 ORTHO05D003612 1.4e-31 139.4 89 78.7
MD13G1203600 Malus domestica HOM05D003117 ORTHO05D003612 2.4e-31 138.7 89 77.5
Potri.008G160400 Populus trichocarpa HOM05D003117 ORTHO05D003612 3.2e-31 138.3 89 77.5
PGR142G2368 Punica granatum HOM05D003117 ORTHO05D003612 3.2e-31 138.3 89 77.5
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 4.1e-31 137.9 89 77.5
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 4.1e-31 137.9 95 75.8
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 4.1e-31 137.9 89 77.5
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 4.1e-31 137.9 89 77.5
Psat0s4097g0040 Pisum sativum HOM05D003117 ORTHO05D003612 4.1e-31 137.9 85 80.0
arahy.Tifrunner.gnm1.ann1.7J7E83 Arachis hypogaea HOM05D003117 ORTHO05D003612 5.4e-31 137.5 89 75.3
arahy.Tifrunner.gnm1.ann1.EG5LEH Arachis hypogaea HOM05D003117 ORTHO05D003612 5.4e-31 137.5 89 75.3
Cfa008401 Carpinus fangiana HOM05D003117 ORTHO05D003612 5.4e-31 137.5 89 77.5
Haze_11267 Corylus avellana HOM05D003117 ORTHO05D003612 5.4e-31 137.5 89 77.5
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 5.4e-31 137.5 89 75.3
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 5.4e-31 137.5 95 72.6
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 5.4e-31 137.5 95 72.6
Peaxi162Scf00788g00312 Petunia axillaris HOM05D003117 ORTHO05D003612 5.4e-31 137.5 87 77.0
Phvul.007G279900 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 5.4e-31 137.5 85 80.0
CARHR220780 Cardamine hirsuta HOM05D003117 ORTHO05D003612 7.0e-31 137.1 89 76.4
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 7.0e-31 137.1 89 74.2
CiPaw.01G192600 Carya illinoinensis HOM05D003117 ORTHO05D003612 9.2e-31 136.7 89 77.5
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 9.2e-31 136.7 89 75.3
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 1.2e-30 136.3 89 76.4
Eucgr.H00222 Eucalyptus grandis HOM05D003117 ORTHO05D003612 1.6e-30 136.0 89 74.2
Thhalv10024477m.g Eutrema salsugineum HOM05D003117 ORTHO05D003612 1.6e-30 136.0 83 79.5
Manes.03G170200 Manihot esculenta HOM05D003117 ORTHO05D003612 1.6e-30 136.0 89 74.2
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 1.6e-30 136.0 89 76.4
Solyc09g083130.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 1.6e-30 136.0 89 74.2
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 2.0e-30 135.6 89 73.0
FvH4_4g02060 Fragaria vesca HOM05D003117 ORTHO05D003612 2.0e-30 135.6 89 76.4
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 2.0e-30 135.6 89 76.4
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 2.0e-30 135.6 89 73.0
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 2.0e-30 135.6 89 75.3
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 2.7e-30 135.2 89 75.3
Sopen09g032010 Solanum pennellii HOM05D003117 ORTHO05D003612 2.7e-30 135.2 89 73.0
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 73.0
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 73.0
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 73.0
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 73.0
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 73.0
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 75.3
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 3.5e-30 134.8 89 74.2
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 4.6e-30 134.4 89 75.3
Nitab4.5_0007585g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 4.6e-30 134.4 89 71.9
Sabra08G0122300 Salix brachista HOM05D003117 ORTHO05D003612 4.6e-30 134.4 96 70.8
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 4.6e-30 134.4 89 74.2
A08p11210 Brassica napus HOM05D003117 ORTHO05D003612 6.0e-30 134.0 89 70.8
BraA08t33117Z Brassica rapa HOM05D003117 ORTHO05D003612 6.0e-30 134.0 89 70.8
RcHm_v2.0_Chr4g0389431 Rosa chinensis HOM05D003117 ORTHO05D003612 6.0e-30 134.0 85 80.0
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 7.8e-30 133.7 89 73.0
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 7.8e-30 133.7 89 73.0
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 7.8e-30 133.7 89 71.9
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 7.8e-30 133.7 89 74.2
Prupe.1G026800 Prunus persica HOM05D003117 ORTHO05D003612 1.0e-29 133.3 89 76.4
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 1.3e-29 132.9 85 75.3
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.3e-29 132.9 89 70.8
RcHm_v2.0_Chr4g0389461 Rosa chinensis HOM05D003117 ORTHO05D003612 1.3e-29 132.9 89 71.9
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 1.3e-29 132.9 89 73.0
ClCG06G006600 Citrullus lanatus HOM05D003117 ORTHO05D003612 1.7e-29 132.5 89 71.9
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 1.7e-29 132.5 89 73.0
MD16G1205500 Malus domestica HOM05D003117 ORTHO05D003612 1.7e-29 132.5 92 70.7
PSO210G1820 Papaver somniferum HOM05D003117 ORTHO05D003612 1.7e-29 132.5 95 68.4
Solyc09g083120.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 1.7e-29 132.5 87 74.7
Sopen09g032000 Solanum pennellii HOM05D003117 ORTHO05D003612 1.7e-29 132.5 87 74.7
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 2.3e-29 132.1 78 82.1
CsaV3_2G013240 Cucumis sativus L. HOM05D003117 ORTHO05D003612 2.3e-29 132.1 89 71.9
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 2.3e-29 132.1 89 73.0
AL7G41570 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 3.0e-29 131.7 82 78.0
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 3.0e-29 131.7 82 78.0
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 3.0e-29 131.7 89 73.0
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 3.0e-29 131.7 85 75.3
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 3.9e-29 131.3 89 74.2
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 3.9e-29 131.3 89 74.2
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 3.9e-29 131.3 95 68.4
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 5.0e-29 131.0 89 70.8
Lj6g0018324 Lotus japonicus HOM05D003117 ORTHO05D003612 5.0e-29 131.0 83 81.9
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 5.0e-29 131.0 89 71.9
THA.LOC104822254 Tarenaya hassleriana HOM05D003117 ORTHO05D003612 5.0e-29 131.0 83 77.1
MELO3C014268.2 Cucumis melo HOM05D003117 ORTHO05D003612 6.6e-29 130.6 89 69.7
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 6.6e-29 130.6 85 76.5
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 6.6e-29 130.6 89 71.9
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 6.6e-29 130.6 95 68.4
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 8.6e-29 130.2 89 71.9
FAN12G0712 Fragaria x ananassa HOM05D003117 ORTHO05D003612 8.6e-29 130.2 89 70.8
MD16G1205200 Malus domestica HOM05D003117 ORTHO05D003612 8.6e-29 130.2 92 69.6
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 8.6e-29 130.2 89 70.8
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 8.6e-29 130.2 89 71.9
AT4G14570 Arabidopsis thaliana HOM05D003117 ORTHO05D003612 1.1e-28 129.8 82 75.6
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 1.1e-28 129.8 85 75.3
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 1.1e-28 129.8 89 73.0
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 1.1e-28 129.8 102 67.6
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 1.1e-28 129.8 89 73.0
BcaC07g37831 Brassica carinata HOM05D003117 ORTHO05D003612 1.5e-28 129.4 85 71.8
BolC8t48215H Brassica oleracea HOM05D003117 ORTHO05D003612 1.5e-28 129.4 85 71.8
MD16G1205600 Malus domestica HOM05D003117 ORTHO05D003612 1.9e-28 129.0 89 74.2
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 1.9e-28 129.0 89 70.8
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.9e-28 129.0 84 76.2
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 2.5e-28 128.6 83 75.9
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 3.3e-28 128.3 95 68.4
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 4.3e-28 127.9 89 70.8
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 4.3e-28 127.9 89 70.8
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 4.3e-28 127.9 89 70.8
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 4.3e-28 127.9 89 70.8
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 4.3e-28 127.9 89 70.8
AUR62013049 Chenopodium quinoa HOM05D003117 ORTHO05D003612 5.6e-28 127.5 89 71.9
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 5.6e-28 127.5 85 71.8
MD16G1205300 Malus domestica HOM05D003117 ORTHO05D003612 5.6e-28 127.5 89 73.0
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 7.3e-28 127.1 89 69.7
QL06p015015 Quercus lobata HOM05D003117 ORTHO05D003612 7.3e-28 127.1 95 69.5
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 7.3e-28 127.1 89 71.9
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 7.3e-28 127.1 89 69.7
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 7.3e-28 127.1 87 72.4
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 9.5e-28 126.7 89 69.7
FAN12G3229 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.2e-27 126.3 91 72.5
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 1.2e-27 126.3 89 67.4
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 1.2e-27 126.3 89 69.7
EL10Ac9g21398 Beta vulgaris HOM05D003117 ORTHO05D003612 1.6e-27 125.9 89 69.7
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 1.6e-27 125.9 89 71.9
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.1e-27 125.6 83 75.9
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.1e-27 125.6 83 75.9
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 2.8e-27 125.2 85 71.8
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 2.8e-27 125.2 85 71.8
AUR62027936 Chenopodium quinoa HOM05D003117 ORTHO05D003612 4.7e-27 124.4 89 69.7
CAN.G749.34 Capsicum annuum HOM05D003117 ORTHO05D003612 8.0e-27 123.6 87 69.0
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 1.1e-26 123.2 87 70.1
ATR0665G110 Amborella trichopoda HOM05D003117 ORTHO05D003612 1.4e-26 122.9 89 69.7
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 1.4e-26 122.9 92 66.3
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 6.8e-26 120.6 83 69.9
Psat6g136360 Pisum sativum HOM05D003117 ORTHO05D003612 8.9e-26 120.2 132 53.8
FAN22G1146 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.0e-25 119.0 73 76.7
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 2.0e-25 119.0 89 65.2
FAN12G3237 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.6e-25 118.6 90 65.6
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 4.4e-25 117.9 85 68.2
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 5.8e-25 117.5 83 67.5
SalBow2G2395 Salvia bowleyana HOM05D003117 ORTHO05D003612 7.5e-25 117.1 76 73.7
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 1.7e-24 115.9 83 67.5
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 3.7e-24 114.8 87 63.2
HPP92_026601 Vanilla planifolia HOM05D003117 ORTHO05D003612 1.1e-23 113.2 76 69.7
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.9e-23 112.5 89 62.9
AUR62010057 Chenopodium quinoa HOM05D003117 ORTHO05D003612 7.1e-23 110.5 120 52.5
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 9.2e-23 110.2 74 74.3
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 9.2e-23 110.2 89 59.6
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.2e-22 109.8 89 57.3
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.7e-22 108.6 74 73.0
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 1.3e-21 106.3 92 60.9
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 3.0e-21 105.1 85 62.4
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 6.6e-21 104.0 87 60.9
arahy.Tifrunner.gnm1.ann1.6YLS1K Arachis hypogaea HOM05D003117 ORTHO05D003612 1.2e-19 99.8 56 85.7
Actinidia27515 Actinidia chinensis HOM05D003117 ORTHO05D003612 1.4e-18 96.3 56 82.1
FAN17G0901 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.4e-18 96.3 59 76.3
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 3.4e-17 91.7 86 52.3
Prupe.8G050400 Prunus persica HOM05D000001 ORTHO05D009373 3.4e-17 91.7 57 77.2
AL3G37460 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 1.4e-15 86.3 68 63.2
SHI00569 Sapria himalayana HOM05D003117 ORTHO05D003612 5.4e-15 84.3 56 73.2
CAN.G1652.1 Capsicum annuum HOM05D003117 ORTHO05D003612 3.9e-13 78.2 50 72.0
CAN.G665.24 Capsicum annuum HOM05D003117 ORTHO05D003612 3.9e-13 78.2 50 72.0
Cre05.g241650 Chlamydomonas reinhardtii HOM05D003117 ORTHO05D003612 5.1e-13 77.8 86 41.9
Cpa.g.c42693 Carica papaya HOM05D003117 ORTHO05D003612 6.2e-11 70.9 42 76.2
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 2.4e-10 68.9 77 44.2
CAN.G521.7 Capsicum annuum HOM05D002023 ORTHO05D002049 1.9e-07 59.3 44 65.9
PRCOL_00005468 Prasinoderma coloniale HOM05D003117 ORTHO05D003612 2.1e-06 55.8 89 38.2
Nitab4.5_0001497g0060 Nicotiana tabacum HOM05D003117 ORTHO05D003612 6.0e-06 54.3 46 58.7


User provided reference genes

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