Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 8.4e-54 213.4 104 100.0
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.7e-30 136.0 106 62.3
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 8.4e-30 133.7 103 68.0
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.3e-26 121.7 109 56.9
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 9.6e-26 120.2 111 62.2
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.0e-22 110.2 109 54.1
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 2.7e-20 102.1 94 59.6
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 1.0e-19 100.1 94 58.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.9e-18 95.9 110 50.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 4.3e-18 94.7 111 47.7
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-17 93.2 109 45.9
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 8.2e-17 90.5 113 46.9
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 2.4e-16 89.0 109 46.8
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 9.0e-16 87.0 122 46.7
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.7e-14 82.8 123 43.1
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.2e-14 82.4 100 48.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 6.5e-14 80.9 109 45.9
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 7.9e-12 73.9 111 43.2
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 7.9e-12 73.9 110 40.9
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 1.4e-11 73.2 106 40.6
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 8.8e-11 70.5 107 43.9
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.0e-10 69.3 106 39.6
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.0e-10 69.3 104 49.0
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.5e-10 68.9 104 45.2
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 3.3e-10 68.6 102 46.1
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 4.3e-10 68.2 116 39.7
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 7.4e-10 67.4 104 46.2
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 9.7e-10 67.0 104 45.2
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 9.7e-10 67.0 124 36.3
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.3e-09 66.6 105 46.7
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 6.3e-09 64.3 109 42.2
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.8e-08 62.8 98 42.9
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.8e-08 62.8 129 37.2
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.4e-08 62.4 122 39.3
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 3.1e-08 62.0 112 41.1
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 4.1e-08 61.6 99 42.4
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 6.9e-08 60.8 109 36.7
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.6e-07 58.9 109 40.4
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.6e-07 58.9 129 34.1
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.6e-07 58.9 129 34.1
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 4.5e-07 58.2 107 41.1
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 5.9e-07 57.8 113 35.4
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 1.0e-06 57.0 99 40.4
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 1.0e-06 57.0 99 40.4
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.9e-06 55.5 75 44.0
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.9e-06 55.5 119 37.8
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.8e-06 55.1 109 37.6
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 3.8e-06 55.1 124 34.7
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 6.5e-06 54.3 109 36.7
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 6.5e-06 54.3 109 36.7
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 6.5e-06 54.3 110 32.7
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 6.5e-06 54.3 100 38.0
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 8.5e-06 53.9 95 38.9
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 8.5e-06 53.9 105 34.3


User provided reference genes

Program Settings