Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28237 Trifolium pratense HOM05D002903 ORTHO05D003066 3.9e-120 434.9 232 100.0
Medtr3g096450 Medicago truncatula HOM05D002903 ORTHO05D003066 3.3e-74 282.3 242 72.3
Psat5g061200 Pisum sativum HOM05D009467 ORTHO05D010918 2.9e-38 162.9 159 64.2
Phvul.009G155800 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 2.4e-32 143.3 272 43.0
Glyma.06G154700 Glycine max HOM05D002903 ORTHO05D003066 1.2e-31 141.0 247 44.1
Lj1g0005492 Lotus japonicus HOM05D002903 ORTHO05D003066 6.7e-27 125.2 218 47.2
VMungo1309G1474 Vigna mungo HOM05D002903 ORTHO05D003066 1.8e-24 117.1 241 44.0
arahy.Tifrunner.gnm1.ann1.TSX9B2 Arachis hypogaea HOM05D002903 ORTHO05D003066 5.3e-24 115.5 247 41.7
CiPaw.03G119900 Carya illinoinensis HOM05D002903 ORTHO05D003066 1.8e-19 100.5 249 38.6
QL10p043057 Quercus lobata HOM05D002903 ORTHO05D003066 8.8e-19 98.2 192 42.2
Haze_25272 Corylus avellana HOM05D002903 ORTHO05D003066 3.7e-17 92.8 254 31.9
Haze_25271 Corylus avellana HOM05D002903 ORTHO05D003066 6.3e-17 92.0 256 32.8
Haze_25273 Corylus avellana HOM05D002903 ORTHO05D003066 6.3e-17 92.0 256 32.8
Cfa002912 Carpinus fangiana HOM05D002903 ORTHO05D003066 2.4e-16 90.1 263 32.3
GSVIVG01022345001 Vitis vinifera HOM05D002903 ORTHO05D003066 3.4e-15 86.3 194 38.7
arahy.Tifrunner.gnm1.ann1.4FGN3C Arachis hypogaea HOM05D002903 ORTHO05D003066 8.5e-14 81.6 216 38.0
Dinv19537 Davidia involucrata HOM05D002903 ORTHO05D003066 1.1e-13 81.3 159 42.1
CiPaw.04G081400 Carya illinoinensis HOM05D002903 ORTHO05D003066 7.2e-13 78.6 264 30.7
Lalb_Chr08g0238241 Lupinus albus HOM05D002903 ORTHO05D003066 9.4e-13 78.2 246 38.2
Gorai.012G036500 Gossypium raimondii HOM05D002903 ORTHO05D003066 1.2e-12 77.8 176 36.4
Dinv24393 Davidia involucrata HOM05D002903 ORTHO05D003066 2.7e-12 76.6 186 38.2
Gohir.A05G383200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.6e-12 76.3 180 36.1
Prupe.4G272900 Prunus persica HOM05D002903 ORTHO05D003066 3.6e-12 76.3 256 34.8
Potri.005G064700 Populus trichocarpa HOM05D002903 ORTHO05D003066 6.1e-12 75.5 202 34.7
Gohir.D04G032100 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.0e-11 74.7 176 35.8
FAN26G0773 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.4e-11 74.3 245 32.2
Potri.007G104500 Populus trichocarpa HOM05D002903 ORTHO05D003066 1.4e-11 74.3 194 33.5
Duzib187G0480 Durio zibethinus HOM05D002903 ORTHO05D003066 1.8e-11 73.9 266 32.7
FAN23G0840 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.8e-11 73.9 245 31.4
FAN19G0913 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.3e-11 73.6 240 32.5
FvH4_1g24530 Fragaria vesca HOM05D002903 ORTHO05D003066 3.9e-11 72.8 242 32.2
FAN28G2835 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.9e-11 72.8 246 32.1
Thecc.01G134700 Theobroma cacao HOM05D002903 ORTHO05D003066 6.7e-11 72.0 239 35.1
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 2.0e-10 70.5 196 39.3
Sabra07G0085500 Salix brachista HOM05D002903 ORTHO05D003066 2.6e-10 70.1 229 30.1
Sabra05G0053700 Salix brachista HOM05D002903 ORTHO05D003066 7.4e-10 68.6 153 36.6
Actinidia20071 Actinidia chinensis HOM05D002903 ORTHO05D003066 9.7e-10 68.2 162 34.6
FvH4_2g15290 Fragaria vesca HOM05D002903 ORTHO05D003066 9.7e-10 68.2 147 38.1
FAN24G3523 Fragaria x ananassa HOM05D002903 ORTHO05D003066 9.7e-10 68.2 147 38.1
Actinidia12224 Actinidia chinensis HOM05D002903 ORTHO05D003066 1.3e-09 67.8 187 33.7
Hma1.2p1_0539F.1_g174540 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 2.2e-09 67.0 182 34.1
FAN20G1459 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.8e-09 66.6 147 37.4
COL.COLO4_35772 Corchorus olitorius HOM05D002903 ORTHO05D003066 3.7e-09 66.2 189 35.4
Nn1g06302 Nelumbo nucifera HOM05D002903 ORTHO05D003066 6.3e-09 65.5 159 36.5
Actinidia06611 Actinidia chinensis HOM05D002903 ORTHO05D003066 8.2e-09 65.1 146 32.9
FAN27G1654 Fragaria x ananassa HOM05D002903 ORTHO05D003066 8.2e-09 65.1 147 37.4
Manes.12G157200 Manihot esculenta HOM05D002903 ORTHO05D003066 1.4e-08 64.3 226 31.9
Nitab4.5_0005642g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 1.4e-08 64.3 123 37.4
Rhsim08G0001600 Rhododendron simsii HOM05D002903 ORTHO05D003066 1.8e-08 63.9 146 39.7
Thecc.08G137400 Theobroma cacao HOM05D002903 ORTHO05D003066 1.8e-08 63.9 202 31.7
Migut.H00687 Erythranthe guttata HOM05D002903 ORTHO05D003066 2.4e-08 63.5 151 35.1
Gohir.A02G112000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.4e-08 63.5 164 34.1
Gorai.013G109100 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.4e-08 63.5 164 33.5
Gohir.D03G062500 Gossypium hirsutum HOM05D002903 ORTHO05D003066 5.3e-08 62.4 164 32.9
MBI03_g20844_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 9.1e-08 61.6 189 33.9
TAR376G0422 Trochodendron aralioides HOM05D002903 ORTHO05D003066 1.2e-07 61.2 172 33.1
Nn5g28499 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.5e-07 60.8 158 35.4
Cpa.g.sc42.173 Carica papaya HOM05D002903 ORTHO05D003066 2.0e-07 60.5 190 34.2
Solyc05g056380.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 2.6e-07 60.1 163 33.7
Sopen05g034770 Solanum pennellii HOM05D002903 ORTHO05D003066 3.4e-07 59.7 163 33.7
FAN15G2216 Fragaria x ananassa HOM05D002903 ORTHO05D003066 4.5e-07 59.3 147 36.1
DCAR_001203 Daucus carota HOM05D002903 ORTHO05D003066 5.9e-07 58.9 191 31.4
RcHm_v2.0_Chr2g0121941 Rosa chinensis HOM05D002903 ORTHO05D003066 5.9e-07 58.9 236 30.1
SGA_v2.0_scaffold20G09019 Striga asiatica HOM05D002903 ORTHO05D003066 5.9e-07 58.9 162 30.2
TAR625G1102 Trochodendron aralioides HOM05D002903 ORTHO05D003066 5.9e-07 58.9 164 34.8
Aqoxy5G02305 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 7.7e-07 58.5 242 31.8
Thecc.06G085300 Theobroma cacao HOM05D002903 ORTHO05D003066 1.3e-06 57.8 121 41.3
Thecc.06G085900 Theobroma cacao HOM05D002903 ORTHO05D003066 1.3e-06 57.8 121 41.3
Ciclev10003587m.g Citrus clementina HOM05D002903 ORTHO05D003066 2.9e-06 56.6 174 32.2
Gohir.D02G076000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.9e-06 56.6 169 33.1
Gorai.005G085300 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.9e-06 56.6 169 33.1
Nitab4.5_0002270g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 2.9e-06 56.6 178 35.4
Oeu004513.1 Olea europaea HOM05D002903 ORTHO05D003066 2.9e-06 56.6 217 29.5
RcHm_v2.0_Chr6g0278041 Rosa chinensis HOM05D002903 ORTHO05D003066 3.8e-06 56.2 175 32.0
QL09p029695 Quercus lobata HOM05D002903 ORTHO05D003066 5.0e-06 55.8 159 32.1
Peaxi162Scf00353g00026 Petunia axillaris HOM05D002903 ORTHO05D003066 6.5e-06 55.5 159 32.7
Peaxi162Scf00505g00053 Petunia axillaris HOM05D002903 ORTHO05D003066 6.5e-06 55.5 158 31.6
CSS0044801 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 8.5e-06 55.1 113 38.1
Sed0005775 Sechium edule HOM05D002903 ORTHO05D003066 8.5e-06 55.1 215 29.8


User provided reference genes

Program Settings