Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28183 Trifolium pratense HOM05D001616 ORTHO05D038312 5.3e-37 157.1 78 100.0
Os04g0665400 Oryza sativa ssp. japonica HOM05D001616 ORTHO05D004707 5.0e-11 70.9 62 61.3
Zm00001eb067210 Zea mays HOM05D001616 ORTHO05D004707 5.0e-11 70.9 62 61.3
Lalb_Chr10g0107201 Lupinus albus HOM05D001616 ORTHO05D004707 6.6e-11 70.5 76 56.6
Ca_06353_v3 Cicer arietinum L. HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
Glyma.02G295800 Glycine max HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
Glyma.14G017600 Glycine max HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
LjContig00272g0015073 Lotus japonicus HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
MD11G1208400 Malus domestica HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
Medtr5g094120 Medicago truncatula HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
Psat2g010320 Pisum sativum HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
TPR.G18336 Trifolium pratense HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
TPR.G30647 Trifolium pratense HOM05D001616 ORTHO05D004707 8.6e-11 70.1 58 67.2
Carub.0008s1561 Capsella rubella HOM05D001616 ORTHO05D004707 1.1e-10 69.7 44 79.5
VMungo0647G1145 Vigna mungo HOM05D001616 ORTHO05D004707 1.9e-10 68.9 58 65.5
Aa31LG4G210 Aethionema arabicum HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
ATR1101G003 Amborella trichopoda HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 75.0
AL8G30832 Arabidopsis lyrata HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
AT5G55280 Arabidopsis thaliana HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BcaB05g22196 Brassica carinata HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BcaB08g35888 Brassica carinata HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BcaC03g14249 Brassica carinata HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BcaC04g20252 Brassica carinata HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
A02p09770 Brassica napus HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
A10p12540 Brassica napus HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
C02p16300 Brassica napus HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
C09p45700 Brassica napus HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BolC2t07731H Brassica oleracea HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BolC9t57456H Brassica oleracea HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BraA02t06041Z Brassica rapa HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
BraA10t43347Z Brassica rapa HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
CARHR268640 Cardamine hirsuta HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
CDE08G0977 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 2.5e-10 68.6 62 61.3
CDE09G1321 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 2.5e-10 68.6 62 61.3
Thhalv10013612m.g Eutrema salsugineum HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
FvH4_3g23650 Fragaria vesca HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
FAN11G3310 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
FAN16G1556 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
FAN21G0984 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
FAN25G1481 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
MBI16_g41929_MAGBIO Magnolia biondii HOM05D001616 ORTHO05D004707 2.5e-10 68.6 44 77.3
RcHm_v2.0_Chr5g0041711 Rosa chinensis HOM05D001616 ORTHO05D004707 2.5e-10 68.6 62 61.3
arahy.Tifrunner.gnm1.ann1.4MH8P5 Arachis hypogaea HOM05D001616 ORTHO05D004707 3.3e-10 68.2 44 77.3
arahy.Tifrunner.gnm1.ann1.C665MH Arachis hypogaea HOM05D001616 ORTHO05D004707 3.3e-10 68.2 44 77.3
Lalb_Chr00c48g0412901 Lupinus albus HOM05D001616 ORTHO05D004707 3.3e-10 68.2 44 77.3
Lalb_Chr00c48g0413031 Lupinus albus HOM05D001616 ORTHO05D004707 3.3e-10 68.2 44 77.3
Lalb_Chr04g0248101 Lupinus albus HOM05D001616 ORTHO05D004707 3.3e-10 68.2 44 77.3
Cfa020268 Carpinus fangiana HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
CiPaw.12G134300 Carya illinoinensis HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
Ca_14771_v3 Cicer arietinum L. HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
Haze_09754 Corylus avellana HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
Glyma.08G322800 Glycine max HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
Psat5g175920 Pisum sativum HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
THA.LOC104811637 Tarenaya hassleriana HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
TPR.G32223 Trifolium pratense HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
GSVIVG01037738001 Vitis vinifera HOM05D001616 ORTHO05D004707 4.3e-10 67.8 44 75.0
COL.COLO4_09745 Corchorus olitorius HOM05D001616 ORTHO05D004707 5.6e-10 67.4 65 60.0
Eucgr.F03510 Eucalyptus grandis HOM05D001616 ORTHO05D004707 5.6e-10 67.4 58 63.8
MD03G1192200 Malus domestica HOM05D001616 ORTHO05D004707 5.6e-10 67.4 58 63.8
ClCG10G004930 Citrullus lanatus HOM05D001616 ORTHO05D004707 7.3e-10 67.0 44 75.0
MELO3C014156.2 Cucumis melo HOM05D001616 ORTHO05D004707 7.3e-10 67.0 44 75.0
CsaV3_3G004580 Cucumis sativus L. HOM05D001616 ORTHO05D004707 7.3e-10 67.0 44 75.0
Prupe.4G225000 Prunus persica HOM05D001616 ORTHO05D004707 7.3e-10 67.0 58 63.8
Sed0015616 Sechium edule HOM05D001616 ORTHO05D004707 7.3e-10 67.0 44 75.0
Atru.chr2.3541 Acer truncatum HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Atru.chr2.3561 Acer truncatum HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Ah.04g166270 Amaranthus hybridus HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Ah.06g182100 Amaranthus hybridus HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
arahy.Tifrunner.gnm1.ann1.JAGV0H Arachis hypogaea HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
arahy.Tifrunner.gnm1.ann1.YP9IVY Arachis hypogaea HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
EL10Ac4g07674 Beta vulgaris HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 72.7
Cpa.g.sc12.232 Carica papaya HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
CiPaw.11G195600 Carya illinoinensis HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
AUR62015903 Chenopodium quinoa HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
AUR62020320 Chenopodium quinoa HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Ciclev10008445m.g Citrus clementina HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Duzib213G0357 Durio zibethinus HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Duzib268G1580 Durio zibethinus HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Glyma.18G089400 Glycine max HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Gohir.A13G136000 Gossypium hirsutum HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Gohir.D01G071400 Gossypium hirsutum HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Gohir.D13G140300 Gossypium hirsutum HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Gorai.002G094200 Gossypium raimondii HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Gorai.013G156900 Gossypium raimondii HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Nn1g03321 Nelumbo nucifera HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Phvul.006G049100 Phaseolus vulgaris HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
PGR031G1881 Punica granatum HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Sp6g17200 Schrenkiella parvula HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
VMungo0540G0108 Vigna mungo HOM05D001616 ORTHO05D004707 9.5e-10 66.6 44 75.0
Aqoxy1G04093 Aquilegia oxysepala HOM05D001616 ORTHO05D004707 1.2e-09 66.2 44 72.7
PSO017G5877 Papaver somniferum HOM05D001616 ORTHO05D004707 1.2e-09 66.2 44 68.2
Potri.001G359500 Populus trichocarpa HOM05D001616 ORTHO05D004707 1.2e-09 66.2 44 75.0
Sabra16G0237200 Salix brachista HOM05D001616 ORTHO05D004707 1.2e-09 66.2 44 75.0
Hund23192 Selenicereus undatus HOM05D001616 ORTHO05D004707 1.2e-09 66.2 44 72.7
TAR624G0334 Trochodendron aralioides HOM05D001616 ORTHO05D004707 1.2e-09 66.2 44 72.7
CANSAT11G0668 Cannabis sativa HOM05D001616 ORTHO05D004707 1.6e-09 65.9 44 75.0
Medtr3g055590 Medicago truncatula HOM05D001616 ORTHO05D004707 1.6e-09 65.9 44 70.5
PSO478G4081 Papaver somniferum HOM05D001616 ORTHO05D004707 1.6e-09 65.9 44 68.2
CSS0024025 Camellia sinensis var. sinensis HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
Hma1.2p1_3177F.1_g333630 Hydrangea macrophylla HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
Lj6g0015346 Lotus japonicus HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
Pp3c22_4940 Physcomitrium patens HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
Hund01947 Selenicereus undatus HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
Sc03g0008260 Simmondsia chinensis HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
Thecc.07G026200 Theobroma cacao HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
TWI38G0016 Tripterygium wilfordii HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 72.7
HPP92_020517 Vanilla planifolia HOM05D001616 ORTHO05D004707 2.1e-09 65.5 44 75.0
CAN.G337.47 Capsicum annuum HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Cc05_g14410 Coffea canephora HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Dinv40805 Davidia involucrata HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Hma1.2p1_0036F.1_g023020 Hydrangea macrophylla HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Nitab4.5_0001160g0080 Nicotiana tabacum HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Nitab4.5_0005874g0040 Nicotiana tabacum HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Peaxi162Scf00235g00839 Petunia axillaris HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Rhsim04G0016100 Rhododendron simsii HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
SEGI_23500 Sequoiadendron giganteum HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 70.5
Solyc07g065050.4 Solanum lycopersicum HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
Sopen07g033260 Solanum pennellii HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
PGSC0003DMG400022200 Solanum tuberosum HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
SGA_v2.0_scaffold478G52221 Striga asiatica HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
SGA_v2.0_scaffold8G04385 Striga asiatica HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
TAR626G1703 Trochodendron aralioides HOM05D001616 ORTHO05D004707 2.8e-09 65.1 44 72.7
CDE05G2017 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 3.6e-09 64.7 44 70.5
ECA236G1385 Erigeron canadensis HOM05D001954 ORTHO05D004707 3.6e-09 64.7 44 72.7
HanXRQChr11g0334271 Helianthus annuus HOM05D001616 ORTHO05D004707 3.6e-09 64.7 44 72.7
Lsat_1_v5_gn_7_113600 Lactuca sativa HOM05D001616 ORTHO05D004707 3.6e-09 64.7 44 72.7
Nn4g22291 Nelumbo nucifera HOM05D001616 ORTHO05D004707 3.6e-09 64.7 44 65.9
MBI11_g41396_MAGBIO Magnolia biondii HOM05D001616 ORTHO05D004707 4.7e-09 64.3 44 65.9
Aqoxy5G03327 Aquilegia oxysepala HOM05D001616 ORTHO05D004707 6.2e-09 63.9 44 65.9
CDE05G0564 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 6.2e-09 63.9 44 70.5
Gohir.A01G085100 Gossypium hirsutum HOM05D001616 ORTHO05D004707 6.2e-09 63.9 43 74.4
Pp3c19_2490 Physcomitrium patens HOM05D001616 ORTHO05D004707 6.2e-09 63.9 44 65.9
MSTRG.14463 Avicennia marina HOM05D001616 ORTHO05D004707 8.0e-09 63.5 44 70.5
CBR_g22446 Chara braunii HOM05D001616 ORTHO05D004707 8.0e-09 63.5 44 68.2
DCAR_022595 Daucus carota HOM05D001616 ORTHO05D004707 8.0e-09 63.5 42 73.8
Oeu005983.1 Olea europaea HOM05D001616 ORTHO05D004707 8.0e-09 63.5 42 73.8
unitig_27.g25147 Utricularia gibba HOM05D001616 ORTHO05D004707 8.0e-09 63.5 42 73.8
unitig_699.g19466 Utricularia gibba HOM05D001616 ORTHO05D004707 8.0e-09 63.5 42 73.8
Actinidia10755 Actinidia chinensis HOM05D001616 ORTHO05D004707 1.0e-08 63.2 62 56.5
ATR0171G046 Amborella trichopoda HOM05D001616 ORTHO05D038312 1.0e-08 63.2 44 68.2
TWI39G0596 Tripterygium wilfordii HOM05D001616 ORTHO05D004707 1.0e-08 63.2 44 70.5
vmacro09684 Vaccinium macrocarpon HOM05D001616 ORTHO05D004707 1.0e-08 63.2 44 68.2
Dinv22222 Davidia involucrata HOM05D001616 ORTHO05D004707 1.4e-08 62.8 44 68.2
Actinidia35373 Actinidia chinensis HOM05D001616 ORTHO05D004707 2.3e-08 62.0 44 68.2
Migut.M01700 Erythranthe guttata HOM05D001616 ORTHO05D004707 2.3e-08 62.0 62 53.2
Nitab4.5_0003869g0070 Nicotiana tabacum HOM05D001616 ORTHO05D004707 2.3e-08 62.0 44 68.2
TAR629G2377 Trochodendron aralioides HOM05D000372 ORTHO05D000948 2.3e-08 62.0 44 63.6
Lj1A881T83 Lonicera japonica HOM05D001616 ORTHO05D004707 5.2e-08 60.8 44 68.2
Mapoly0029s0085 Marchantia polymorpha HOM05D001616 ORTHO05D004707 6.8e-08 60.5 44 63.6
PGSC0003DMG400012846 Solanum tuberosum HOM05D001616 ORTHO05D004707 6.8e-08 60.5 44 65.9
Lj8C174T5 Lonicera japonica HOM05D001616 ORTHO05D004707 8.9e-08 60.1 44 68.2
Peaxi162Scf01165g00022 Petunia axillaris HOM05D001616 ORTHO05D004707 8.9e-08 60.1 44 68.2
SMO271G0107 Selaginella moellendorffii HOM05D001616 ORTHO05D004707 1.5e-07 59.3 44 61.4
Nitab4.5_0002051g0070 Nicotiana tabacum HOM05D001616 ORTHO05D004707 2.0e-07 58.9 62 53.2
VMungo1215G3201 Vigna mungo HOM05D001616 ORTHO05D004707 4.4e-07 57.8 51 60.8
PSO210G3145 Papaver somniferum HOM05D001616 ORTHO05D004707 7.5e-07 57.0 45 68.9
PSO302G0169 Papaver somniferum HOM05D001616 ORTHO05D004707 7.5e-07 57.0 45 68.9
Solyc12g014560.3 Solanum lycopersicum HOM05D001616 ORTHO05D004707 7.5e-07 57.0 44 63.6
Sopen12g007440 Solanum pennellii HOM05D001616 ORTHO05D004707 9.8e-07 56.6 44 61.4
TPR.G18333 Trifolium pratense HOM05D000062 ORTHO05D000043 1.3e-06 56.2 35 77.1
Cre02.g118600 Chlamydomonas reinhardtii HOM05D001616 ORTHO05D004707 6.4e-06 53.9 44 56.8
TPR.G30641 Trifolium pratense HOM05D000062 ORTHO05D000043 6.4e-06 53.9 55 60.0


User provided reference genes

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