Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 1.3e-151 539.7 267 100.0
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 1.2e-128 463.4 269 89.2
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 6.0e-80 301.6 195 77.9
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 3.8e-74 282.3 251 61.8
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 2.3e-71 273.1 255 61.6
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 3.6e-69 265.8 252 58.7
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 3.5e-64 249.2 132 90.9
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 5.1e-63 245.4 255 56.1
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 5.3e-60 235.3 260 52.3
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 2.3e-55 219.9 231 53.2
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 5.1e-55 218.8 245 51.4
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 7.2e-49 198.4 235 49.4
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 1.3e-47 194.1 252 44.8
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 3.9e-47 192.6 229 48.9
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 4.3e-46 189.1 210 49.0
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 5.7e-46 188.7 213 47.9
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 2.2e-45 186.8 185 51.9
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 2.8e-45 186.4 218 45.0
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 3.7e-45 186.0 235 42.6
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 1.1e-44 184.5 238 44.1
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 5.3e-44 182.2 237 43.9
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 6.9e-44 181.8 231 44.2
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 1.5e-43 180.6 196 49.0
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 2.0e-43 180.3 165 53.9
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 1.0e-42 177.9 163 53.4
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 1.3e-42 177.6 199 51.3
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 2.9e-42 176.4 171 51.5
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 3.8e-42 176.0 189 48.7
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 3.8e-42 176.0 189 48.7
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 5.0e-42 175.6 165 53.9
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 6.5e-42 175.3 186 49.5
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 8.5e-42 174.9 165 53.9
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 1.1e-41 174.5 163 53.4
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.4e-41 174.1 165 53.9
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 2.1e-40 170.2 215 41.9
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 2.1e-40 170.2 211 44.1
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 6.1e-40 168.7 196 45.9
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.8e-39 167.2 172 45.3
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 2.3e-39 166.8 201 43.8
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 8.8e-39 164.9 215 39.1
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 1.1e-38 164.5 196 45.4
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 3.3e-38 162.9 219 47.5
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 4.3e-38 162.5 172 45.3
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 4.3e-38 162.5 191 40.8
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 9.7e-38 161.4 207 43.0
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 2.2e-37 160.2 196 44.9
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 4.8e-37 159.1 171 44.4
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 4.8e-37 159.1 196 41.8
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 8.2e-37 158.3 190 44.2
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 8.2e-37 158.3 194 43.8
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 1.8e-36 157.1 206 41.3
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 6.9e-36 155.2 190 43.7
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 1.2e-35 154.5 215 37.7
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 1.2e-35 154.5 196 41.3
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 1.5e-35 154.1 188 44.7
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 2.0e-35 153.7 193 42.5
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 4.5e-35 152.5 195 40.0
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 5.9e-35 152.1 192 41.1
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 5.9e-35 152.1 192 43.8
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 3.8e-34 149.4 189 41.3
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 5.0e-34 149.1 220 40.9
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 1.4e-33 147.5 232 39.2
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 3.2e-33 146.4 268 35.1
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 3.2e-33 146.4 192 39.6
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 2.7e-32 143.3 169 42.6
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 3.0e-31 139.8 207 38.6
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 6.7e-31 138.7 198 40.4
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 1.5e-30 137.5 199 36.7
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.5e-30 137.5 174 43.1
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 3.3e-30 136.3 190 39.5
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 1.7e-29 134.0 186 40.3
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 2.8e-29 133.3 194 37.6
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 3.7e-29 132.9 199 39.2
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 3.7e-29 132.9 196 38.8
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 1.1e-28 131.3 203 38.9
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 1.1e-28 131.3 202 39.1
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 1.1e-28 131.3 233 34.8
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 3.1e-28 129.8 206 37.9
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 5.3e-28 129.0 206 37.9
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 7.0e-28 128.6 201 36.3
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 4.5e-27 125.9 211 35.1
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 7.7e-27 125.2 201 37.8
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 7.7e-27 125.2 211 36.0
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 9.4e-25 118.2 146 39.7
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 3.6e-24 116.3 226 36.3
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 5.2e-23 112.5 120 42.5
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.0e-22 110.5 167 38.3
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 1.7e-21 107.5 222 32.0
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 8.0e-16 88.6 81 49.4
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 8.0e-16 88.6 81 49.4
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 1.8e-15 87.4 133 36.1
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 2.0e-14 84.0 127 36.2
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.4e-12 77.8 127 40.2
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 3.1e-12 76.6 75 46.7
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 3.5e-11 73.2 86 41.9
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 2.5e-09 67.0 228 24.1
Aa31LG6G3180 Aethionema arabicum HOM05D007956 ORTHO05D010152 4.2e-09 66.2 291 23.7
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 4.2e-09 66.2 242 27.7
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 4.2e-09 66.2 242 27.7
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 4.2e-09 66.2 242 27.7
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 7.2e-09 65.5 225 29.3
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 7.2e-09 65.5 225 29.3
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 1.6e-08 64.3 171 28.1
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 2.1e-08 63.9 219 28.3
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 6.1e-08 62.4 122 32.8
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 6.1e-08 62.4 149 29.5
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.0e-07 61.6 219 27.9
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.4e-07 61.2 179 27.4
Nitab4.5_0000111g0120 Nicotiana tabacum HOM05D006174 ORTHO05D007987 1.4e-07 61.2 116 30.2
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 2.3e-07 60.5 130 30.0
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 2.3e-07 60.5 148 29.7
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 3.0e-07 60.1 200 25.5
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 4.0e-07 59.7 78 42.3
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 6.8e-07 58.9 148 29.7
RcHm_v2.0_Chr4g0419111 Rosa chinensis HOM05D007340 ORTHO05D008979 6.8e-07 58.9 71 46.5
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.5e-06 57.8 107 36.4
FAN04G0610 Fragaria x ananassa HOM05D007291 ORTHO05D009038 1.5e-06 57.8 109 36.7
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 1.5e-06 57.8 242 23.6
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 2.0e-06 57.4 167 25.1
PGSC0003DMG400006019 Solanum tuberosum HOM05D006174 ORTHO05D007987 2.0e-06 57.4 116 28.4
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.6e-06 57.0 228 26.3
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 3.4e-06 56.6 226 25.7
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 3.4e-06 56.6 175 26.3
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 3.4e-06 56.6 136 28.7
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 3.4e-06 56.6 148 29.7
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 4.4e-06 56.2 153 29.4
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 4.4e-06 56.2 249 24.5
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 5.7e-06 55.8 206 27.7
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.7e-06 55.8 148 29.7
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 7.5e-06 55.5 97 32.0
Peaxi162Scf00310g00046 Petunia axillaris HOM05D006174 ORTHO05D007987 7.5e-06 55.5 116 29.3
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 9.8e-06 55.1 238 23.9
Eucgr.K02275 Eucalyptus grandis HOM05D007291 ORTHO05D009038 9.8e-06 55.1 89 38.2
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 9.8e-06 55.1 109 36.7
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 9.8e-06 55.1 183 25.7


User provided reference genes

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