Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.0e-125 454.1 380 100.0
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.8e-101 371.3 368 89.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.6e-89 334.0 365 85.2
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.8e-85 318.2 174 93.7
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 5.3e-82 308.9 170 92.9
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 4.5e-81 305.8 170 92.4
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.2e-80 303.5 167 91.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.0e-80 302.4 373 81.0
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.9e-79 300.4 370 81.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.5e-79 300.1 168 91.7
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 3.2e-79 299.7 195 81.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 5.5e-79 298.9 191 82.2
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 5.5e-79 298.9 186 83.9
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 9.4e-79 298.1 183 85.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.6e-78 297.4 169 90.5
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.1e-78 297.0 169 89.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 2.7e-78 296.6 167 89.8
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.0e-77 294.7 191 82.2
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.4e-77 294.3 186 83.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.8e-77 293.9 201 80.1
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.3e-77 293.5 168 91.7
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 3.0e-77 293.1 178 87.1
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.0e-77 292.7 188 79.8
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.2e-77 292.4 168 88.7
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.2e-76 291.2 182 81.9
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.2e-76 291.2 169 88.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.4e-76 289.7 197 78.2
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 9.8e-76 288.1 187 79.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.3e-75 287.7 374 80.5
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-75 287.7 169 87.0
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.2e-75 287.0 168 88.7
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.2e-75 287.0 187 79.7
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.2e-75 287.0 164 89.6
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.8e-75 286.6 163 89.6
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 3.7e-75 286.2 194 79.4
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.7e-75 286.2 166 88.0
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.8e-75 285.8 163 89.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 6.3e-75 285.4 164 87.2
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 8.3e-75 285.0 198 78.8
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 8.3e-75 285.0 182 80.8
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 8.3e-75 285.0 186 80.1
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 8.3e-75 285.0 168 87.5
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.4e-74 284.3 167 85.6
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.8e-74 283.9 189 77.2
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.8e-74 283.9 191 75.9
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.8e-74 283.9 169 85.8
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.4e-74 283.5 186 80.1
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.4e-74 283.5 186 80.1
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 2.4e-74 283.5 192 78.1
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-74 283.1 186 81.2
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-74 283.1 185 80.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 4.1e-74 282.7 161 87.0
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 5.4e-74 282.3 163 89.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.2e-73 281.2 164 86.0
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.6e-73 280.8 364 74.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.0e-73 280.4 172 83.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.7e-73 280.0 172 83.1
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 4.5e-73 279.3 169 84.6
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 5.9e-73 278.9 175 81.7
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.7e-72 277.3 171 81.9
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.7e-72 277.3 200 76.0
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.3e-72 276.9 168 84.5
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.8e-72 276.2 191 77.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 5.0e-72 275.8 184 77.7
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 6.6e-72 275.4 184 77.2
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 8.6e-72 275.0 177 80.8
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 8.6e-72 275.0 177 82.5
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 8.6e-72 275.0 173 80.3
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 8.6e-72 275.0 167 81.4
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.9e-71 273.9 182 79.1
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.5e-71 273.5 192 75.5
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 2.5e-71 273.5 177 79.7
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 3.3e-71 273.1 181 80.7
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.2e-71 272.7 187 77.5
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 5.5e-71 272.3 171 82.5
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 7.2e-71 271.9 167 82.6
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 7.2e-71 271.9 162 87.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.5e-71 271.6 200 76.5
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 9.5e-71 271.6 165 83.0
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 9.5e-71 271.6 195 76.4
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.6e-70 270.8 162 86.4
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.8e-70 270.0 164 84.8
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.8e-70 270.0 193 74.6
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.7e-70 269.2 169 84.0
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 6.1e-70 268.9 178 80.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 6.1e-70 268.9 154 88.3
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.8e-69 267.3 200 72.0
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 3.0e-69 266.5 176 81.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 5.2e-69 265.8 179 76.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 5.2e-69 265.8 179 76.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 8.9e-69 265.0 179 76.5
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.2e-68 264.6 199 74.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.0e-68 263.8 177 76.8
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.4e-68 262.7 172 81.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 7.5e-68 261.9 155 86.5
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 9.8e-68 261.5 185 76.8
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 9.8e-68 261.5 167 82.0
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 2.2e-67 260.4 169 78.7
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.7e-67 259.6 193 73.1
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 8.3e-67 258.5 178 77.0
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.1e-66 258.1 193 73.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.4e-66 255.8 194 71.6
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 7.0e-66 255.4 199 70.9
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.2e-65 254.6 146 88.4
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 5.9e-65 252.3 187 72.7
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.0e-64 251.5 165 80.0
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.7e-64 250.8 167 77.8
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.3e-64 250.4 180 75.0
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.9e-64 250.0 188 72.9
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 6.6e-64 248.8 159 79.9
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 8.6e-64 248.4 166 77.1
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.5e-63 247.7 142 86.6
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.5e-63 247.7 142 86.6
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 7.3e-63 245.4 167 76.6
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.6e-62 244.2 185 72.4
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 5.2e-61 239.2 135 87.4
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 5.2e-61 239.2 135 87.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 6.8e-61 238.8 149 81.9
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 6.8e-61 238.8 168 74.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.2e-60 238.0 133 91.0
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-60 237.3 134 87.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-60 237.3 134 87.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 9.8e-60 235.0 133 87.2
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-59 233.0 132 87.1
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 6.4e-59 232.3 134 85.8
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 8.3e-59 231.9 133 86.5
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-58 229.6 132 86.4
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 5.4e-58 229.2 143 85.3
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 7.0e-58 228.8 126 87.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-57 226.5 129 86.8
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.5e-57 226.5 133 84.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 6.0e-57 225.7 143 82.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-56 223.8 129 86.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-56 223.4 132 84.1
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-56 223.4 160 73.1
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 8.6e-56 221.9 160 75.6
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-55 219.9 187 65.2
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 4.3e-55 219.5 130 83.8
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 4.3e-55 219.5 186 66.7
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 8.0e-54 215.3 153 74.5
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 8.0e-54 215.3 153 74.5
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-53 214.5 169 68.6
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.2e-52 211.5 177 66.7
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.4e-50 203.8 133 78.9
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.6e-46 191.0 157 66.2
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.6e-46 189.9 188 58.0
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 6.4e-43 179.1 99 90.9
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-42 176.4 132 72.7
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 7.8e-41 172.2 118 77.1
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 6.6e-40 169.1 106 80.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 4.3e-39 166.4 139 67.6
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 7.3e-39 165.6 103 79.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.3e-35 154.8 90 84.4
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 1.4e-34 151.4 105 70.5
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.9e-32 143.3 84 84.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 3.9e-32 143.3 136 57.4
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.5e-31 140.6 84 83.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 9.6e-31 138.7 75 90.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.2e-28 131.7 103 58.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-27 127.9 84 76.2
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.2e-27 127.5 189 46.6
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 4.9e-27 126.3 84 75.0
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-25 120.9 95 68.4
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 5.6e-23 112.8 68 83.8
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 7.3e-23 112.5 196 39.3
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-22 110.9 67 83.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 6.2e-22 109.4 62 85.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.1e-22 109.0 52 100.0
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 5.8e-20 102.8 68 79.4
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.1e-18 98.6 163 42.9
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.2e-18 97.1 56 87.5


User provided reference genes

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