Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 9.0e-116 420.2 207 100.0
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.7e-53 213.4 236 51.7
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.0e-42 177.6 225 45.8
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 5.2e-39 165.2 227 42.7
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-38 163.7 200 47.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.2e-37 159.8 200 46.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.1e-32 143.3 188 46.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 6.8e-31 138.3 203 41.9
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.2e-30 137.5 116 57.8
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 6.4e-29 131.7 200 43.5
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.4e-28 130.6 226 39.4
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.7e-27 126.3 181 43.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 6.0e-27 125.2 212 38.2
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 9.2e-20 101.3 180 37.2
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.0e-19 98.6 176 38.6
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.0e-19 98.6 176 38.6
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.3e-18 96.7 180 36.1
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 9.5e-17 91.3 183 34.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.6e-16 90.5 108 42.6
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.6e-16 90.5 109 42.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.1e-15 86.3 208 29.8
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 3.1e-15 86.3 184 32.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 5.2e-15 85.5 200 29.5
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 5.2e-15 85.5 202 31.7
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.5e-14 84.0 187 28.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.5e-14 84.0 199 28.6
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.0e-14 83.6 219 32.9
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.4e-14 82.8 111 37.8
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 3.4e-14 82.8 174 29.3
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.4e-14 82.4 136 38.2
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.3e-13 80.9 114 39.5
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.7e-13 80.5 195 29.2
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 2.2e-13 80.1 199 27.6
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 2.2e-13 80.1 112 41.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 2.2e-13 80.1 173 32.4
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.9e-13 79.7 202 33.2
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.8e-13 79.3 200 30.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.8e-13 79.3 119 37.8
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.8e-13 79.3 121 35.5
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 4.9e-13 79.0 172 36.0
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 6.4e-13 78.6 192 28.6
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 6.4e-13 78.6 114 37.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 8.4e-13 78.2 115 34.8
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 8.4e-13 78.2 193 30.1
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.9e-12 77.0 109 36.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.2e-12 75.9 111 38.7
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.2e-12 75.9 185 30.3
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 4.2e-12 75.9 110 36.4
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 5.4e-12 75.5 125 36.8
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 7.1e-12 75.1 116 37.1
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.2e-11 74.3 200 29.0
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 3.5e-11 72.8 126 32.5
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 3.5e-11 72.8 158 32.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 4.6e-11 72.4 239 29.7
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 4.6e-11 72.4 107 35.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 6.0e-11 72.0 127 36.2
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.0e-11 72.0 200 31.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.0e-11 72.0 114 36.8
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.8e-11 71.6 105 37.1
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.8e-11 71.6 113 37.2
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.0e-10 71.2 191 27.7
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.7e-10 70.5 189 26.5
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.7e-10 70.5 189 26.5
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.3e-10 70.1 107 36.4
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 2.3e-10 70.1 181 29.3
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 3.0e-10 69.7 174 29.3
TPR.G39827 Trifolium pratense HOM05D006236 ORTHO05D003486 3.0e-10 69.7 104 40.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.9e-10 69.3 135 34.8
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 3.9e-10 69.3 153 30.7
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.9e-10 69.3 109 34.9
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 6.6e-10 68.6 123 31.7
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-10 68.6 119 34.5
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.1e-09 67.8 113 38.9
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.5e-09 67.4 167 28.1
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.5e-09 67.4 111 32.4
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.5e-09 67.4 111 32.4
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.5e-09 66.6 128 32.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.3e-09 66.2 103 35.0
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.3e-09 65.9 156 27.6
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 5.6e-09 65.5 213 30.0
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.6e-09 65.5 111 32.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 9.6e-09 64.7 100 33.0
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.2e-08 64.3 100 40.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.2e-08 64.3 191 27.2
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.2e-08 64.3 123 34.1
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-08 64.3 132 32.6
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.2e-08 64.3 188 29.3
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.6e-08 63.9 128 36.7
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.6e-08 63.9 147 35.4
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.1e-08 63.5 115 35.7
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.8e-08 63.2 107 31.8
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 2.8e-08 63.2 116 37.1
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.8e-08 63.2 145 33.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.6e-08 62.8 114 37.7
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.6e-08 62.8 143 32.2
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 4.7e-08 62.4 110 35.5
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.7e-08 62.4 212 27.8
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 4.7e-08 62.4 190 30.5
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.7e-08 62.4 108 35.2
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 4.7e-08 62.4 168 31.0
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 4.7e-08 62.4 89 37.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.7e-08 62.4 111 30.6
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 8.1e-08 61.6 109 34.9
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 8.1e-08 61.6 109 34.9
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 8.1e-08 61.6 52 44.2
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 8.1e-08 61.6 89 39.3
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-07 61.2 171 27.5
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.4e-07 60.8 179 26.3
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.4e-07 60.8 187 29.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.4e-07 60.1 152 30.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.4e-07 60.1 157 32.5
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.1e-07 59.7 111 31.5
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.1e-07 59.7 109 33.9
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 4.0e-07 59.3 89 33.7
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.0e-07 59.3 173 29.5
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.3e-07 58.9 107 32.7
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 6.9e-07 58.5 117 35.0
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 6.9e-07 58.5 182 28.6
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 6.9e-07 58.5 109 30.3
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 9.0e-07 58.2 121 30.6
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 9.0e-07 58.2 129 32.6
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.2e-06 57.8 109 32.1
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.2e-06 57.8 58 37.9
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.5e-06 57.4 161 29.8
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.0e-06 57.0 181 26.5
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 2.0e-06 57.0 232 23.3
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.0e-06 57.0 109 29.4
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.0e-06 57.0 89 36.0
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.6e-06 56.6 198 28.8
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 2.6e-06 56.6 104 30.8
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 4.4e-06 55.8 182 27.5
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.4e-06 55.8 109 29.4
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 4.4e-06 55.8 125 32.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 5.8e-06 55.5 146 32.9
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 5.8e-06 55.5 182 26.9
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 5.8e-06 55.5 182 26.9
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 5.8e-06 55.5 147 29.9
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 5.8e-06 55.5 84 39.3
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 7.6e-06 55.1 166 28.9
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 7.6e-06 55.1 143 33.6
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 7.6e-06 55.1 143 33.6
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 9.9e-06 54.7 95 34.7
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.9e-06 54.7 119 33.6
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 9.9e-06 54.7 187 25.1


User provided reference genes

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