Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28148 Trifolium pratense HOM05D003515 ORTHO05D004347 7.2e-62 240.4 117 100.0
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 8.0e-53 210.3 118 87.3
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 3.4e-43 178.3 132 72.0
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 3.1e-41 171.8 119 73.1
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 6.1e-37 157.5 126 65.9
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 8.0e-37 157.1 124 66.1
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 1.8e-36 156.0 125 65.6
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 7.0e-33 144.1 127 63.0
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 1.3e-31 139.8 134 59.0
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 2.5e-30 135.6 134 58.2
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 1.8e-28 129.4 124 60.5
Phvul.007G101032 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 2.7e-24 115.5 112 58.9
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 4.3e-22 108.2 132 46.2
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 2.1e-21 105.9 131 49.6
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 2.1e-21 105.9 131 49.6
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 3.6e-21 105.1 131 48.9
MD10G1227100 Malus domestica HOM05D003515 ORTHO05D004347 3.6e-21 105.1 131 49.6
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 6.2e-21 104.4 122 48.4
RcHm_v2.0_Chr5g0021121 Rosa chinensis HOM05D003515 ORTHO05D004347 2.3e-20 102.4 131 45.0
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 3.1e-20 102.1 131 48.1
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.2e-19 100.1 131 45.8
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 7.5e-19 97.4 117 47.9
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 7.5e-19 97.4 128 45.3
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 9.8e-19 97.1 131 42.7
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.9e-18 95.5 130 43.8
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 3.7e-18 95.1 118 43.2
Hma1.2p1_0088F.1_g045250 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 3.7e-18 95.1 123 43.1
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 3.7e-18 95.1 133 43.6
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 4.9e-18 94.7 122 41.0
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 4.9e-18 94.7 131 42.7
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 3.2e-17 92.0 127 47.2
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 4.1e-17 91.7 73 57.5
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 9.2e-17 90.5 131 42.0
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 9.2e-17 90.5 124 40.3
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.7e-16 89.0 132 43.2
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 4.6e-16 88.2 120 40.8
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 4.6e-16 88.2 118 44.9
Cpa.g.sc30.106 Carica papaya HOM05D003515 ORTHO05D004347 1.0e-15 87.0 127 39.4
Potri.003G152600 Populus trichocarpa HOM05D003515 ORTHO05D004347 1.3e-15 86.7 121 45.5
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 1.7e-15 86.3 84 48.8
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 2.3e-15 85.9 123 37.4
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 3.9e-15 85.1 121 42.1
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 1.5e-14 83.2 126 42.1
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 1.9e-14 82.8 115 41.7
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.3e-14 81.6 120 43.3
CSS0004888 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.3e-14 81.6 123 40.7
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 4.3e-14 81.6 74 47.3
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 5.6e-14 81.3 127 38.6
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 5.6e-14 81.3 127 38.6
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 5.6e-14 81.3 56 60.7
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 7.3e-14 80.9 116 41.4
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 7.3e-14 80.9 85 44.7
PGSC0003DMG402001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 9.5e-14 80.5 120 39.2
CSS0041884 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-13 80.1 123 43.1
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.2e-13 80.1 83 49.4
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 1.2e-13 80.1 117 37.6
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 1.2e-13 80.1 118 40.7
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 2.1e-13 79.3 118 41.5
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 3.6e-13 78.6 66 53.0
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 4.7e-13 78.2 121 36.4
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 4.7e-13 78.2 85 43.5
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 1.1e-12 77.0 119 36.1
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 1.8e-12 76.3 55 61.8
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 1.8e-12 76.3 49 65.3
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.3e-12 75.9 69 52.2
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 4.0e-12 75.1 54 57.4
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 4.0e-12 75.1 58 58.6
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 4.0e-12 75.1 120 35.0
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 6.8e-12 74.3 52 65.4
MSTRG.2875 Avicennia marina HOM05D003515 ORTHO05D004347 2.0e-11 72.8 121 39.7
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.6e-11 72.4 69 53.6
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 7.5e-11 70.9 127 36.2
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 7.5e-11 70.9 113 38.1
AUR62040333 Chenopodium quinoa HOM05D003515 ORTHO05D004347 1.3e-10 70.1 69 52.2
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 3.7e-10 68.6 118 40.7
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 3.7e-10 68.6 75 45.3
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 3.7e-10 68.6 111 38.7
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 3.7e-10 68.6 104 36.5
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 1.1e-09 67.0 103 43.7
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.1e-09 67.0 124 38.7
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 1.9e-09 66.2 89 44.9
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 1.9e-09 66.2 89 44.9
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.4e-09 65.9 56 58.9
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 5.4e-09 64.7 124 37.9
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 9.2e-09 63.9 51 52.9
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 9.2e-09 63.9 120 35.8
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 2.7e-08 62.4 74 45.9
SHI28056 Sapria himalayana HOM05D003515 ORTHO05D004347 6.0e-08 61.2 92 39.1
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 1.0e-07 60.5 124 36.3
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.3e-07 60.1 51 51.0
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 3.9e-07 58.5 56 51.8
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 6.6e-07 57.8 61 45.9
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.1e-06 57.0 116 33.6
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 4.3e-06 55.1 120 35.0
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 4.3e-06 55.1 54 51.9
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 5.6e-06 54.7 85 37.6


User provided reference genes

Program Settings