Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1884.8 952 100.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1748.4 957 92.7
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1682.5 956 88.7
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1677.1 955 88.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1662.9 968 86.8
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1642.9 858 95.2
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1627.1 963 86.3
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1617.4 956 86.0
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1585.9 911 87.4
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1580.1 971 82.8
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1570.1 1000 82.1
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1568.5 965 82.6
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1565.8 974 81.5
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1560.8 970 81.8
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1560.4 969 82.8
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 928 84.1
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 891 87.9
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1555.8 901 86.1
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1554.3 959 83.9
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1553.5 892 86.4
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1552.7 889 86.7
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1552.3 977 80.9
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1551.2 892 86.3
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1548.9 922 84.3
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1543.1 892 85.7
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1543.1 893 85.8
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1542.7 980 80.6
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 978 80.2
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1540.8 1004 79.1
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1540.8 887 86.5
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1540.4 965 81.9
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1539.6 902 84.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1537.7 895 85.6
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 900 84.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 886 86.6
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1533.5 902 84.6
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1533.5 901 85.2
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1533.5 889 85.6
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 975 79.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1526.9 972 79.7
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 972 79.6
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 875 86.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 966 79.4
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1524.6 885 84.7
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1524.6 972 79.5
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 922 82.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 961 79.2
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 968 80.1
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 975 79.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1518.4 962 79.0
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 905 83.6
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 915 83.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1515.7 893 84.7
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 959 79.0
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 972 78.1
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 972 78.1
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1506.9 972 78.2
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 960 79.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 891 83.8
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 891 82.7
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 968 77.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 871 85.1
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1490.3 881 84.0
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 940 79.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 975 78.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 893 82.4
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1484.9 901 83.0
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 958 78.1
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 960 78.2
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 874 84.2
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1484.2 844 86.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1483.0 892 82.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 928 79.2
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 871 83.9
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 893 81.6
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 874 83.2
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1474.5 888 83.3
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 940 78.5
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 893 81.4
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 940 78.5
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 940 78.5
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 874 82.3
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 874 83.5
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1471.4 940 78.4
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 924 80.6
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1469.5 893 81.3
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1469.5 889 81.0
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 932 80.2
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 1000 75.9
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1466.4 893 81.1
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 874 83.1
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 937 77.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 841 86.2
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 879 83.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1463.0 947 77.9
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1462.2 873 82.6
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 965 76.1
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1461.0 871 82.5
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1458.4 858 83.8
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1455.3 873 81.8
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1454.5 803 89.0
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1453.3 879 81.2
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1453.3 884 80.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1452.6 856 83.9
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 858 82.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 945 76.8
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1439.5 856 83.6
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1424.5 954 76.0
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1421.0 844 82.2
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1419.8 911 79.7
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1415.6 1004 73.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1401.0 948 75.8
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1398.3 881 77.9
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 885 76.7
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1386.7 901 78.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1384.4 852 80.0
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1376.7 882 79.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1373.6 907 74.4
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1371.7 872 76.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1364.4 774 86.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 823 81.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1349.7 874 78.1
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1332.0 909 75.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1324.3 803 83.3
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1312.4 874 77.7
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1293.1 884 76.5
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1281.9 879 75.9
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1257.3 746 83.8
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1249.6 876 73.3
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1221.8 727 81.8
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1218.4 777 78.9
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1194.5 856 68.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1177.5 899 66.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1095.5 633 84.8
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 0.0e+00 1088.9 629 87.1
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 6.2e-297 1024.2 581 85.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.4e-296 1023.1 882 59.8
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.9e-262 909.1 909 54.3
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.1e-216 757.7 537 72.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.1e-216 755.7 513 75.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.8e-211 738.4 505 75.6
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 4.2e-192 676.0 420 81.4
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-189 667.2 451 75.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 7.1e-184 648.7 743 49.5
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.5e-162 577.8 338 84.0
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 6.5e-161 572.4 467 66.0
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.6e-151 541.2 293 91.5
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.5e-136 490.7 391 65.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 8.9e-110 402.5 321 68.2
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.4e-109 400.2 423 53.2
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 6.2e-95 353.2 232 77.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 4.9e-92 343.6 258 69.4
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-70 272.7 227 67.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 7.1e-67 260.0 216 65.3
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 7.2e-59 233.4 151 76.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.7e-47 195.7 119 79.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-42 178.7 268 43.7
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.1e-35 156.4 114 66.7
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.1e-30 139.8 85 78.8
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.0e-28 133.3 81 81.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-28 131.7 83 79.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.5e-28 130.6 91 69.2
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 6.1e-26 124.0 95 70.5
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.8e-25 122.5 130 53.8
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.3e-23 116.3 430 27.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.3e-20 106.3 56 87.5
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 1.2e-18 99.8 60 76.7
Psat0ss7919g0160 Pisum sativum HOM05D003956 ORTHO05D324927 2.4e-14 85.5 79 65.8
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-11 75.1 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-11 74.7 49 73.5
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 5.6e-11 74.3 57 66.7
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.4e-09 69.7 43 74.4
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-09 69.3 43 81.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.8e-09 69.3 140 35.7
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 2.3e-09 68.9 46 71.7
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.9e-07 62.0 43 67.4


User provided reference genes

Program Settings