Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 2.5e-145 518.8 276 100.0
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-138 496.1 276 92.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.8e-133 478.8 276 88.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.0e-131 472.6 276 87.7
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.5e-131 471.9 276 86.6
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 5.0e-130 468.0 276 87.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.2e-129 465.3 276 85.9
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 7.2e-129 464.2 276 85.5
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 9.4e-129 463.8 276 85.5
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.7e-128 462.2 276 84.8
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.7e-128 462.2 276 85.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 3.6e-128 461.8 276 84.8
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.0e-127 460.3 276 84.4
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.0e-127 460.3 276 84.4
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.0e-127 460.3 276 84.8
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.4e-127 459.9 276 84.4
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 4.0e-127 458.4 276 84.4
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 4.0e-127 458.4 276 84.4
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 5.2e-127 458.0 276 84.1
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.4e-126 454.9 276 84.1
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.2e-125 452.6 276 83.3
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 4.8e-125 451.4 276 83.3
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 4.8e-125 451.4 276 83.3
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 6.3e-125 451.1 276 81.9
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 6.3e-125 451.1 276 81.9
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.1e-124 450.3 276 81.5
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.1e-124 450.3 276 82.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.8e-124 449.5 275 81.8
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.8e-124 449.5 275 81.8
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.4e-124 449.1 276 81.2
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.1e-124 448.7 277 83.0
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.1e-124 448.7 276 82.6
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.1e-124 448.7 276 82.6
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.1e-124 448.7 276 82.2
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 3.1e-124 448.7 276 82.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 7.0e-124 447.6 276 81.5
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 7.0e-124 447.6 275 81.5
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 7.0e-124 447.6 276 83.0
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 9.1e-124 447.2 276 81.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-123 446.8 276 82.2
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.2e-123 446.8 276 83.0
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.2e-123 446.8 275 82.5
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-123 446.4 274 81.8
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.6e-123 446.4 274 81.8
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.6e-123 446.4 276 83.0
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.0e-123 446.0 276 81.5
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 3.5e-123 445.3 276 81.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 4.5e-123 444.9 276 82.2
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 7.7e-123 444.1 276 81.5
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.0e-122 443.7 276 82.6
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.0e-122 443.7 276 80.1
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.7e-122 443.0 276 80.1
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.3e-122 442.6 276 81.2
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.3e-122 442.6 273 82.1
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.8e-122 441.8 276 80.8
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.8e-122 441.8 276 80.1
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.0e-122 441.4 276 81.2
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 5.0e-122 441.4 277 80.5
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 5.0e-122 441.4 277 81.6
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 5.0e-122 441.4 277 81.6
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 5.0e-122 441.4 276 81.9
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.5e-121 439.9 276 80.8
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.5e-121 439.9 276 80.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.5e-121 439.9 276 81.5
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.5e-121 439.9 276 80.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.9e-121 439.5 276 79.7
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.3e-121 438.7 276 79.3
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.3e-121 438.7 276 79.3
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 3.3e-121 438.7 276 79.7
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 5.5e-121 438.0 276 80.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 5.5e-121 438.0 276 80.4
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.5e-121 438.0 276 79.3
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 5.5e-121 438.0 276 80.8
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 7.2e-121 437.6 276 80.8
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 7.2e-121 437.6 276 80.8
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 7.2e-121 437.6 300 76.7
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 9.5e-121 437.2 276 80.4
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 9.5e-121 437.2 276 80.8
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.2e-120 436.8 276 80.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.2e-120 436.8 279 80.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.2e-120 436.8 276 80.4
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.2e-120 436.8 276 79.3
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.6e-120 436.4 276 79.3
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.6e-120 436.4 275 80.0
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.6e-120 436.4 275 81.1
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-120 436.0 276 79.3
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.1e-120 436.0 276 79.3
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.8e-120 435.6 276 79.7
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.8e-120 435.6 277 80.1
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.8e-120 435.6 276 80.1
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.8e-120 435.6 276 79.3
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 3.6e-120 435.3 276 79.0
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 4.7e-120 434.9 276 79.3
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.7e-120 434.9 276 79.7
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 4.7e-120 434.9 276 80.1
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 6.1e-120 434.5 276 78.6
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 8.0e-120 434.1 275 79.3
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 8.0e-120 434.1 277 80.5
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.0e-119 433.7 276 80.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.8e-119 433.0 276 80.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.8e-119 433.0 275 79.3
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.3e-119 432.6 276 80.1
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 3.0e-119 432.2 276 78.6
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 4.0e-119 431.8 275 79.3
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 6.8e-119 431.0 276 79.0
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 8.9e-119 430.6 280 77.9
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.2e-118 430.3 276 81.2
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.5e-118 429.9 276 79.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.5e-118 429.9 276 78.6
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 2.6e-118 429.1 276 79.0
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.6e-118 429.1 276 79.3
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 2.6e-118 429.1 276 78.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 3.4e-118 428.7 284 77.5
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 5.7e-118 427.9 276 78.3
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 7.5e-118 427.6 276 78.6
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 7.5e-118 427.6 276 78.6
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 9.8e-118 427.2 271 79.3
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.2e-117 426.0 276 79.7
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.2e-117 426.0 276 78.3
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.2e-117 426.0 276 78.3
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.2e-117 426.0 276 78.3
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 4.9e-117 424.9 274 78.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.4e-116 423.3 276 76.8
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.8e-116 422.9 271 78.6
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.1e-116 422.2 276 77.5
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 7.0e-116 421.0 276 77.5
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.6e-115 419.9 276 76.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.1e-113 413.7 277 75.5
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-111 406.4 292 72.9
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.2e-110 403.7 276 75.4
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.2e-110 403.7 276 75.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.5e-110 403.3 256 80.9
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.7e-109 399.8 213 90.6
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.5e-107 392.1 276 68.5
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 3.5e-107 392.1 276 72.1
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 3.9e-106 388.7 277 70.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.6e-105 384.8 256 76.6
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-104 383.3 256 76.2
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.8e-103 379.8 201 90.0
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.8e-102 374.8 276 71.4
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 9.8e-102 374.0 195 92.3
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.9e-101 372.5 281 70.5
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.5e-99 365.5 200 88.5
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.5e-99 365.5 276 71.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.3e-98 363.6 261 72.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 7.3e-97 357.8 324 63.3
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 9.5e-97 357.5 237 77.2
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 2.3e-95 352.8 255 71.8
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.3e-95 352.8 276 68.5
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.2e-92 340.9 352 55.1
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.9e-90 335.5 271 67.5
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.8e-88 329.3 275 60.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.9e-87 324.3 177 87.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.7e-82 310.1 161 91.9
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-71 273.5 240 63.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 6.4e-69 265.0 214 60.7
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.3e-58 229.9 113 97.3
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.0e-53 214.5 157 72.0
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-53 214.2 158 71.5
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 5.7e-49 198.7 98 93.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.1e-44 184.5 150 66.7
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 2.3e-42 176.8 109 79.8
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.5e-41 173.3 196 51.5
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 6.3e-40 168.7 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.0e-38 163.7 135 63.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 2.2e-37 160.2 92 84.8
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 8.5e-37 158.3 284 41.5
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.3e-34 150.2 195 47.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.3e-29 134.4 115 64.3
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 5.0e-29 132.5 81 82.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 3.2e-28 129.8 91 71.4
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.1e-23 114.8 111 59.5
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.5e-12 77.0 81 54.3
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.5e-09 67.8 79 50.6
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 2.8e-08 63.5 52 67.3
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 8.3e-08 62.0 59 54.2
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 2.4e-07 60.5 52 57.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 5.4e-07 59.3 34 82.4


User provided reference genes

Program Settings