Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 2.1e-123 445.7 219 100.0
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 7.3e-116 420.6 219 92.7
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 3.6e-115 418.3 217 92.6
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.9e-108 396.0 216 90.3
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 5.6e-108 394.4 219 88.6
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 6.8e-106 387.5 216 87.5
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 8.3e-104 380.6 220 85.0
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 9.2e-103 377.1 218 86.2
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 1.2e-102 376.7 217 82.5
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 2.7e-102 375.6 217 82.5
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 2.7e-102 375.6 215 83.3
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 6.6e-101 370.9 215 80.9
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 1.1e-100 370.2 217 80.2
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 1.9e-100 369.4 217 81.1
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 1.9e-100 369.4 217 82.5
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 7.3e-100 367.5 217 80.6
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 9.5e-100 367.1 217 80.6
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 1.6e-99 366.3 219 80.4
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 2.8e-99 365.5 212 81.1
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 3.6e-99 365.2 213 81.7
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 4.7e-99 364.8 217 79.3
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 8.1e-99 364.0 217 79.7
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 1.1e-98 363.6 217 81.6
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.1e-98 363.6 217 79.7
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 1.8e-98 362.8 219 80.8
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.0e-98 361.7 217 78.3
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.0e-98 361.7 212 79.7
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 4.0e-98 361.7 217 78.8
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 5.2e-98 361.3 217 79.3
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 6.8e-98 360.9 216 80.6
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 6.8e-98 360.9 217 77.9
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 8.9e-98 360.5 212 79.2
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 1.5e-97 359.8 217 80.6
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 78.3
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 2.0e-97 359.4 217 78.8
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 2.6e-97 359.0 213 79.8
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 2.6e-97 359.0 215 78.6
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 4.4e-97 358.2 216 77.8
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 4.4e-97 358.2 217 78.3
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.3e-96 356.7 213 78.4
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 1.7e-96 356.3 215 76.7
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 1.7e-96 356.3 215 76.7
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 2.2e-96 355.9 215 76.7
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 2.9e-96 355.5 212 80.2
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 2.9e-96 355.5 217 77.4
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 3.7e-96 355.1 212 80.7
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 6.4e-96 354.4 215 78.1
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 1.9e-95 352.8 218 79.4
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 1.9e-95 352.8 215 76.3
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 9.2e-95 350.5 209 78.9
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.2e-94 350.1 217 78.3
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 1.6e-94 349.7 214 77.6
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.6e-94 349.7 232 72.8
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 2.7e-94 349.0 216 77.3
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 4.6e-94 348.2 215 77.7
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 4.6e-94 348.2 217 77.0
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 4.6e-94 348.2 215 76.7
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 7.8e-94 347.4 217 77.0
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 1.0e-93 347.1 218 74.3
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 1.7e-93 346.3 217 77.4
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 2.3e-93 345.9 214 78.5
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 3.0e-93 345.5 215 74.9
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 5.1e-93 344.7 216 76.4
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 6.6e-93 344.4 214 75.2
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 1.5e-92 343.2 215 76.3
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 2.5e-92 342.4 209 76.1
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 2.5e-92 342.4 215 75.8
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 2.5e-92 342.4 217 76.0
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.3e-92 342.0 212 75.5
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 3.3e-92 342.0 215 75.3
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 4.3e-92 341.7 217 77.0
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 4.3e-92 341.7 218 72.9
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 9.6e-92 340.5 216 76.4
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.6e-91 339.7 215 75.3
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 3.6e-91 338.6 215 75.3
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 3.6e-91 338.6 215 75.3
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 3.6e-91 338.6 215 74.9
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 3.6e-91 338.6 215 74.9
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 4.7e-91 338.2 212 75.0
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 8.1e-91 337.4 202 78.2
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 1.8e-90 336.3 215 75.3
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 4.0e-90 335.1 216 75.0
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 6.8e-90 334.3 212 74.5
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 6.8e-90 334.3 212 74.5
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 1.2e-89 333.6 216 75.5
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 1.1e-84 317.0 202 75.2
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 7.3e-84 314.3 214 71.0
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 2.8e-83 312.4 219 71.2
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 3.6e-83 312.0 201 72.6
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 2.4e-82 309.3 213 70.9
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 6.9e-82 307.8 211 70.1
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 1.5e-81 306.6 215 71.2
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 9.9e-81 303.9 208 70.2
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 1.3e-80 303.5 216 67.6
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.3e-80 303.5 205 68.8
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 1.9e-79 299.7 216 67.6
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 1.6e-78 296.6 222 67.1
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.1e-74 283.9 190 72.6
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.4e-74 282.7 144 93.8
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 9.0e-74 280.8 219 63.5
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 3.8e-72 275.4 189 68.3
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 1.1e-71 273.9 184 67.9
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.3e-69 266.9 191 67.5
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.0e-69 265.8 202 63.4
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 7.4e-68 261.2 263 54.4
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 5.3e-66 255.0 149 79.2
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.6e-62 243.4 150 74.7
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 2.7e-62 242.7 147 77.6
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 8.7e-61 237.7 147 76.2
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.9e-55 219.9 177 57.6
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 5.9e-49 198.4 191 49.7
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.2e-46 190.7 103 86.4
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 3.7e-35 152.5 209 43.5
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.4e-28 129.0 85 71.8
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 3.1e-26 122.9 66 87.9
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 3.1e-26 122.9 95 60.0
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 9.4e-23 111.3 84 61.9
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 2.1e-22 110.2 68 75.0
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 2.1e-22 110.2 87 59.8
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 3.5e-17 92.8 66 63.6
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 8.8e-13 78.2 143 37.1
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 2.8e-11 73.2 41 80.5
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 7.8e-09 65.1 141 28.4
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.7e-08 63.9 141 27.7
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.3e-08 63.5 141 27.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.3e-08 63.5 141 27.0
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 8.6e-08 61.6 186 24.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.1e-07 61.2 141 27.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.5e-07 60.8 183 24.6
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 3.3e-07 59.7 194 26.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.3e-07 59.7 141 29.8
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.3e-07 59.7 141 29.8
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 4.3e-07 59.3 141 29.8
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 7.3e-07 58.5 186 24.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 7.3e-07 58.5 202 25.7
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 28.4
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 2.1e-06 57.0 141 27.0
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 3.6e-06 56.2 141 26.2


User provided reference genes

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