Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.8e-70 268.5 134 100.0
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-40 170.2 88 96.6
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.2e-38 162.5 87 92.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.2e-38 162.5 87 92.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 6.4e-38 161.0 94 86.2
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.3e-35 153.3 88 88.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 2.8e-33 145.6 88 84.1
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 4.9e-30 134.8 88 78.4
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 6.4e-30 134.4 88 77.3
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 3.2e-29 132.1 89 76.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 9.2e-29 130.6 88 76.1
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.9e-26 122.9 88 71.6
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.4e-24 116.7 88 70.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 9.8e-23 110.5 88 60.2
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.7e-22 109.8 88 60.2
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 1.7e-22 109.8 94 58.5
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 6.4e-22 107.8 97 52.6
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 1.1e-21 107.1 118 46.6
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 3.2e-21 105.5 88 56.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 3.2e-21 105.5 88 60.2
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.5e-20 102.1 98 51.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 3.5e-20 102.1 109 52.3
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 6.0e-20 101.3 98 51.0
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 6.0e-20 101.3 114 47.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 7.8e-20 100.9 88 59.1
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 7.8e-20 100.9 95 54.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 7.8e-20 100.9 89 58.4
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.8e-20 100.9 114 50.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 1.0e-19 100.5 88 58.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 1.7e-19 99.8 88 59.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 3.0e-19 99.0 94 54.3
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 3.0e-19 99.0 98 53.1
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 3.9e-19 98.6 88 59.1
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 3.9e-19 98.6 98 53.1
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 3.9e-19 98.6 99 51.5
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 5.1e-19 98.2 104 51.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 6.6e-19 97.8 89 58.4
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.5e-18 96.7 99 52.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.9e-18 96.3 101 53.5
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 1.9e-18 96.3 114 45.6
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 2.5e-18 95.9 88 55.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 2.5e-18 95.9 88 55.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 2.5e-18 95.9 90 55.6
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.5e-18 95.9 98 52.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.5e-18 95.9 98 52.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 2.5e-18 95.9 89 55.1
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 3.3e-18 95.5 88 52.3
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 3.3e-18 95.5 120 45.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 7.3e-18 94.4 88 55.7
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 7.3e-18 94.4 88 54.5
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 7.3e-18 94.4 99 50.5
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 9.5e-18 94.0 100 50.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.2e-17 93.6 88 54.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.2e-17 93.6 92 55.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 1.2e-17 93.6 88 54.5
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.6e-17 93.2 100 54.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 1.6e-17 93.2 111 45.9
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.8e-17 92.4 89 55.1
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.2e-17 91.3 100 51.0
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 6.2e-17 91.3 92 50.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 8.1e-17 90.9 88 53.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 1.1e-16 90.5 119 42.0
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.1e-16 90.5 101 51.5
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.4e-16 90.1 96 47.9
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.8e-16 89.7 120 45.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 2.3e-16 89.4 94 47.9
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 4.0e-16 88.6 94 46.8
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 5.2e-16 88.2 94 50.0
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.8e-16 87.8 89 49.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 6.8e-16 87.8 90 53.3
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 8.9e-16 87.4 100 48.0
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 1.2e-15 87.0 94 47.9
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.0e-15 86.3 89 50.6
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 2.0e-15 86.3 94 45.7
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.6e-15 85.9 89 50.6
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 4.4e-15 85.1 89 49.4
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 5.8e-15 84.7 46 91.3
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 7.6e-15 84.3 94 48.9
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 9.9e-15 84.0 84 51.2
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 1.7e-14 83.2 95 47.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 6.4e-14 81.3 95 49.5
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 1.9e-13 79.7 94 43.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 1.9e-13 79.7 105 44.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.9e-13 79.7 98 43.9
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.9e-13 79.7 94 43.6
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.4e-13 79.3 110 39.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 3.2e-13 79.0 123 39.8
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 9.2e-13 77.4 89 48.3
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 9.2e-13 77.4 115 37.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.5e-12 75.5 84 45.2
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 4.6e-12 75.1 115 36.5
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.0e-11 73.9 93 40.9
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.7e-11 73.2 85 43.5
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 8.6e-11 70.9 104 40.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 2.1e-09 66.2 69 49.3
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.6e-09 65.5 96 38.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 4.7e-09 65.1 95 38.9
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.1e-09 64.3 78 39.7
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 4.9e-06 55.1 53 50.9


User provided reference genes

Program Settings